Gene detail

Gene detail information of Glyur000022s00002003

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G04790.1	5.00E-175	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_006582247.1	0	PREDICTED: pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like isoform X1 [Glycine max]
Swissprot	tr\|Q6NQ81\|PP304_ARATH	0	Pentatricopeptide repeat-containing protein At4g04790, mitochondrial (Precursor)
trEMBL	tr\|G7JF19\|G7JF19_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:AES89885.2}

Sequence

Transcript Sequence

>Glyur000022s00002003.1
GCTGCACACACACTTTGGTCCTTCCATTTCCTACTGCCAATATTTCAACAGCTCCACAAAGCAACACAAAACAAAACGCATTCTGAAGGAGCGTACAAACTACAAGAGTACAAACCAATTCCGTTTATTTTTTTGAAGCAAACAAAAATCATCTCATTCACCTTCTTCTTCTTCTTGTTGCAGAGCTTAGATGCGTGCTCCCACCGCCAGAAAACTATGCACTCTAAGCTCCTTTTTCCGTTCACACTCACAGTTTCACCGCAAAATATCATCTTCTTCTTGTGAACCTGAACAACATTACGGTTCAGACTTCAGCCTCTCAGCCCTCAAACTCGATGGTGCCTCTTCCCCAGCTCCTCGGGTAAAGAAGCTTGTTTCCAAGGAAATTGATGATGATGAAAAAAGCAAAAGAATAGTGGATGTACCATTGTTACCAGACCTNTCTCATGGTGAGGTATCACTCAAAAGGAAGGAGGCATCTCGTGAGAGGAAACAAAAATGGATTTTTAAATACACAAGNGATGAGCGGTTCAACAGGTTACTTAAAATGTGCACAAAAAAACTGGGAAAAAGTGCTACAGCTGACATGTTTGGCCACTTAGGTAGAGAAACAGGTCTGAAAGAGTATAATGCATTGATAAATTTGTGCATAAAGAAGGCCAGGGCAGCTGATAATGAACACATTGCTATAGAAGAAATGAGTAGGGCTTTTCACCTCTTTGGTTTCATGAGGGATTGTGGCTTTCAGGTACAAGAGCAAACGTATTACCCGCTTCTTCAGTATATAATTGACATGGGTATGGTTCAAGAATTTCAACTTTTCTCTGATGTTATCAAAGCTGATAACCCCAGATCCATTCCACGATTGGGTTACTATGAAATGATGCTGTGGATAAGAGTTAACAATGAAGAAATGATCCGGGATATTTGTGAATATATTACAGTCGAAGATAGTGAAGACACTTCTGCTTTACGAGAAAGTTACTTATTGGCTCTTTGTGAAAGTGATCGGAAGACACAGATTGTGGATGTGTTGAAAAATATAGACATAACAAAGCTTACATCTGCAGAATCAATAGCAAATATATTCCAATCACTAGGAAGGTTACTGCTGGAATCTGATGCAGAGAATTTACTTTTGGATTTGAGAGCACATGATCATGATGCAGATAATATTTCAAACTTCATTGTTAGTTATGCTNTTAGCATTCCAAATTTAGAGGTTGAGGATATCATCTCAAAAGTCGAGAATTTGCATGAAGTATTGGAAGTTTTNCCTTCATTCTCATCGTATGAAAAGCTCATTTTTTATTGTTGTGGCTTACACAAGGTGGATGTAGCTCTTGATATTGTCGATAAAATGTGTAAAGCAGGCTTTACGNTACCTACTGAGGTGTTACATTCCATCTTAAAAATTTGTGAGGAAACTTGTGATTATATTTTGGTCCATCAAATCTATTCCATCATATGTCGCCACCATTTGAAGTTGAATGGTGAAATATGCAAGTGTTTGGTACAATTTTGTGTAAAGATGAAAGATTTTGAAGGTGCATACAAGATGGTTGATGACTTGCGGGAAATGAATTTCAAACCTACGACAGCCATGTACAATGCTATATTGGCAGGATATCTTCGGGAGAAAAACATCAGTGGTGGGTTGAGGGTCCTCAAACACATGCAAGATGCCAACGTAAAACCTGATTCACATACTTTCAGCTATTTGATTAGCAATTGTGAGACGGAAGAGGATATAAATAAGTATTATAAAGAACTGAAGCAATCTGGAATCCAAGCTACCAAAAAAATTTTTATGGCCCTTATTGATGCATATGCAGCTTGTGGTGAATTGGAGAAGGCAAAACAGGTGGTTTTAGATCCAAAAATACCATTGAAGAGCTTAAATGAAATTAAGAGTGTCCTTGTCTCAGCTCTTGCATCACATGGGCAATTGTCCGAGTCGCTTCTTATATACGAGGAGATCAAGAAAGCTGGACACAATTTGGAGCCAAAAGCTGTTATAAGCCTCATTAAGGAGTTGGCTCAATTAAGGGGAGAGTTGGATGGGTTGCTTCTTCTACTCAAGGAATTAAGTGATCTGGACTATTGGGTTGATGGTTGCTTCANGGTTATCAAGTATTGTGTTCACAATAATCATTTAAGTTCTGCTATTNTCTTGTTCAATCAACTCAAGGATAAGTTCGAAAACGATGAAACAGTAACGGAAGTTCTATTTGATGCAGTATTTTCTATAATCGCGGCATCCGAGTCCAAACATTTACAGTTTGGGCTGGACTTGCTTTGGGCAATCAAGGATGAGCTTGGCCTTGTTCCGTCGCGGCAGTGTCTTGATTTCCTTCTAAGTGCTTGTGCCAGTGCGGGAGATTTGAATAATGCTCGTTTGATTTGGAGAGAATATGAGGTGGCTGGATTTCCTTACAACGTATTAAGCTACTTGAGGATGTATCAGGCAGTTTTGGCATCAGGAGATCACAGATCTGCTAACTTTATGCTCAAGAAAATTCCCAGAGATGATGCCGAGGTTTGTTCTATCATCTTAGCATGTCAACAAACATACGGTGATAAGCTTAACTCTGTAGGAGAGAGAAAGAAAAAGAAAAAGAAAAAGAAGAGCGAGGCTTGATCGAGTACAAGTTCCATTGGTGTAGGGTAGACAGATCTGTTCCCACTAATTTTTATTTGTATTAAGAAATGTGCTTCACAAAGAATGATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	209729	219734	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00002003.1	PF13041.1	PPR_2	468	515	1.50E-10
Glyur000022s00002003.1	PF01535.15	PPR	540	559	0.39
Glyur000022s00002003.1	PF01535.15	PPR	575	601	0.18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.914
SRR1783600	control	1.924
SRR1783602	moderate drought stress	2.283
SRR1811619	moderate drought stress	2.287

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.865
DRR006520	Root Summer glycyrrhizin high producing strain	2.765
DRR006521	Root Winter glycyrrhizin high producing strain	0.539
DRR006522	Root Winter glycyrrhizin high producing strain	0.473
DRR006523	Root Summer glycyrrhizin low producing strain	2.140
DRR006524	Root Summer glycyrrhizin low producing strain	2.172
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.620
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.605

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.006
SRR2868004	Drought Stress (root)	4.168
SRR2967015	Control (root)	4.156

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.587
SRR9715740	Leaf	3.851
SRR9715741	Leaf	3.148
SRR9715739	Root	0.182
SRR9715742	Root	0.817
SRR9715743	Root	0.897

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.317
SRR8749028	MeJA induced 9h	4.119
SRR8749029	MeJA induced 9h	3.621
SRR8749030	Uninduced	1.126
SRR8749031	Uninduced	0.310
SRR8749032	Uninduced	0.316

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.811
SRR8400027	Control - Root	7.714