Gene detail information of Glyur000022s00002002 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G20600.1 | 8.00E-22 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | XP_004505437.1 | 7.85E-87 | PREDICTED: protein NDR1-like [Cicer arietinum] |
| Swissprot | tr|O48915|NDR1_ARATH | 1.00E-44 | Protein NDR1 (Precursor) |
| trEMBL | tr|G7JF17|G7JF17_MEDTR | 3.00E-84 | NDR1-like protein {ECO:0000313|EMBL:AES89883.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00022 | 203794 | 204408 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.702 |
| SRR1783600 | control | 0.878 |
| SRR1783602 | moderate drought stress | 1.971 |
| SRR1811619 | moderate drought stress | 2.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.351 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.214 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.450 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.192 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.659 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.669 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.932 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.799 |
| SRR2868004 | Drought Stress (root) | 1.839 |
| SRR2967015 | Control (root) | 2.438 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.757 |
| SRR9715740 | Leaf | 7.207 |
| SRR9715741 | Leaf | 10.572 |
| SRR9715739 | Root | 1.156 |
| SRR9715742 | Root | 1.533 |
| SRR9715743 | Root | 2.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.350 |
| SRR8749028 | MeJA induced 9h | 0.592 |
| SRR8749029 | MeJA induced 9h | 1.101 |
| SRR8749030 | Uninduced | 0.285 |
| SRR8749031 | Uninduced | 0.043 |
| SRR8749032 | Uninduced | 0.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.220 |
| SRR8400027 | Control - Root | 2.762 |