Gene detail

Gene detail information of Glyur000022s00001997

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54750.1	1.00E-77	Transport protein particle (TRAPP) component
NR	XP_004505441.1	7.87E-104	PREDICTED: trafficking protein particle complex subunit 3-like isoform X2 [Cicer arietinum]
trEMBL	tr\|I3SMY8\|I3SMY8_LOTJA	3.00E-104	Uncharacterized protein {ECO:0000313\|EMBL:AFK41630.1}

Sequence

Transcript Sequence

>Glyur000022s00001997.1
CTCTACCGTGTATACCCAACCAATCCCTCCACAGGCAAAGCCTCAAAGAACCCTCCTTTCTCCGCATAACCCCTATTTTTATCACTGCTGCTCCATTTGTACTGTTTGAATCAGCAGCAGCAACAAAGATTGCATTTCTCTATCTTTGTCTGTGTTTTTCTTTTGGTGTGGCTTTCTCCGTTGTGGCCGCGAGGAAGAGTACCGGAGATAGTAGTGCGCTGGAAGATGATGGATTTGACCTCTCTGCCCCTGATCGCCGTCTAGCAGCTCAAGGCGTTCGGTAAGCTGGCACCGCCGTTGACGCCGACGGGAATCCGTATCGCCTCGAAGTCGACAACGGTAACGAGGATGCTCCCAATGCCGGAGAAGCTCTGAACATTACCCTATTCCCTTCCAATATTCGCGTCAAATCCTTAGCCTTAACTCTAAATTTAAAAAAAATCCAATAATTAAAGAATAAAAAACAAAAAACAATGGTGGTAGAATGAGAGGTTTGAGAGAGGGAAAGAGAGTGACCTGCGAAGGCGATTCTCATTACTGCATTAGCAAAGAATGGAAGAAGAAGGAGGGAGAGGGGTAAGAATTGTGTGTGGGTAAGTGTTGGTATTCTCTATTTTTCATCAACAAACCTTGATCATTGGTTTTCCTATCACTAAATCTAAAGGTTATAAAACTATTAAAAACTATTTCAAAACTATACCCACCCATACATCACTTAGAAACAATTTCACGGTAACATGCCAATAATTTGTTATAAGCGCTTATGCCATAATTTGTTATAAGCACTTATGCCCACCCATACAATATATTTATATGATAAGCGCTTATGCCATAATTTGTTATATCATCGATCTCAACCATTAAAAAAAACTTAACAATACTTAATGGTANAGATGAATGGATTTACTTTAGGAGAGTCGTCACTTCAGAACACCCAGAGCGGTATTCCATGGCCGCACACTCCCACTTCCCGCCTCTCTGAGATTCTAAGAGAAGCACGTCGCCGCCGCAATTCGTTGCTAGCATTTTCTCAGCAAAACAAAGCTGAGTGAGCTCCATCAATGGCCCCAGTTGCTCCTCGATCTGGCGATGCAATATTTGCTAACATTGAACGTGTAAATGCAGAGCTGTTTACTTTGACATATGGGGCGATTGTGCNTCAATTGCTCACAGATCTGGAAGAGGTTGAGGAGGTTAACAAACAGCTAGATCAAATGGGTTATAATATCGGAACCCGTTTGATTGATGANTTTTTAGCTAAATCTAATGTCTCGAGGTTGGTTTTAAAATGTTCCTTGGTGACCAATTGGGATGCTGAAGGGACCTGTTGTAGTATCGTTTTGGAGGACAATCATTTGGTAGACTTTGTTGAGCTCCCTGACAACTGTCAAGGTCTGTACTACTGCAACATCTTAAGTGGAGTCATTAGAGGAGCCTTAGATATGGTGTCAATGAAGACTGAGGTCACATGGATACGTGATGTGCTTCGAGGTGATGATGTGTTTGAGTTGCAGGTAAAACTTCTCAAGCAAGTACCAGAAGAGTATCCATATAAGGATGATGAGTGACATTCTTTTTTGTAATGTTGTACTTCATCTTTTCCCAAGTATTAGATTATTATCTTTCTGTCTTGTGCTGTGTGCATTTTGATGAAACTAGAAATACAATAGAAATTTTGTAATTAAATCAATTACTATATTGACTTTGACTGTGGGCTATGATCTATCCTGTTCTGAGAGCCCTCTAGACTTTTAAATTGTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	191334	194802	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00001997.1	PF04051.11	TRAPP	23	72	2.40E-10
Glyur000022s00001997.1	PF04051.11	TRAPP	79	153	6.00E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.365
SRR1783600	control	0.316
SRR1783602	moderate drought stress	0.237
SRR1811619	moderate drought stress	0.192

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.260
DRR006520	Root Summer glycyrrhizin high producing strain	2.215
DRR006521	Root Winter glycyrrhizin high producing strain	1.196
DRR006522	Root Winter glycyrrhizin high producing strain	1.211
DRR006523	Root Summer glycyrrhizin low producing strain	4.542
DRR006524	Root Summer glycyrrhizin low producing strain	4.332
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.158
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.263

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.490
SRR2868004	Drought Stress (root)	0.974
SRR2967015	Control (root)	1.509

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.403
SRR9715740	Leaf	0.445
SRR9715741	Leaf	0.375
SRR9715739	Root	0.312
SRR9715742	Root	0.472
SRR9715743	Root	0.309

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.831
SRR8749028	MeJA induced 9h	0.648
SRR8749029	MeJA induced 9h	0.624
SRR8749030	Uninduced	0.274
SRR8749031	Uninduced	0.142
SRR8749032	Uninduced	0.267

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.936
SRR8400027	Control - Root	1.550