Gene detail information of Glyur000022s00001996 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27130.1 | 7.00E-56 | Translation initiation factor SUI1 family protein |
| NR | KHN46541.1 | 1.27E-82 | Protein translation factor SUI1 like 1 [Glycine soja] |
| Swissprot | tr|O48650|SUI1_SALBA | 1.00E-71 | Protein translation factor SUI1 homolog |
| trEMBL | tr|C6SY38|C6SY38_SOYBN | 4.00E-74 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G16390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00022 | 187901 | 189824 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000022s00001996.1 | PF01253.17 | SUI1 | 49 | 128 | 2.50E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 311.990 |
| SRR1783600 | control | 313.380 |
| SRR1783602 | moderate drought stress | 764.902 |
| SRR1811619 | moderate drought stress | 763.556 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 921.922 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 903.276 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 466.612 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 463.440 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 734.337 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 729.706 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 103.727 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 102.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 382.539 |
| SRR2868004 | Drought Stress (root) | 546.851 |
| SRR2967015 | Control (root) | 536.907 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 326.164 |
| SRR9715740 | Leaf | 369.519 |
| SRR9715741 | Leaf | 397.094 |
| SRR9715739 | Root | 2264.486 |
| SRR9715742 | Root | 1213.447 |
| SRR9715743 | Root | 1476.704 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 829.372 |
| SRR8749028 | MeJA induced 9h | 382.281 |
| SRR8749029 | MeJA induced 9h | 712.097 |
| SRR8749030 | Uninduced | 608.599 |
| SRR8749031 | Uninduced | 599.419 |
| SRR8749032 | Uninduced | 1306.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 581.289 |
| SRR8400027 | Control - Root | 508.049 |