Gene detail information of Glyur000022s00001995 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27130.1 | 8.00E-56 | Translation initiation factor SUI1 family protein |
| NR | KHN46541.1 | 6.43E-82 | Protein translation factor SUI1 like 1 [Glycine soja] |
| Swissprot | tr|Q0D5W6|SUI1_ORYSJ | 9.00E-72 | Protein translation factor SUI1 homolog |
| trEMBL | tr|C6SY38|C6SY38_SOYBN | 3.00E-75 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G16390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00022 | 181161 | 184004 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000022s00001995.1 | PF01253.17 | SUI1 | 53 | 132 | 1.10E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 170.354 |
| SRR1783600 | control | 170.923 |
| SRR1783602 | moderate drought stress | 346.094 |
| SRR1811619 | moderate drought stress | 342.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 788.036 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 777.208 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 452.670 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 433.373 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 599.066 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 613.501 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 124.710 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 127.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 546.150 |
| SRR2868004 | Drought Stress (root) | 671.061 |
| SRR2967015 | Control (root) | 614.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 383.136 |
| SRR9715740 | Leaf | 474.784 |
| SRR9715741 | Leaf | 455.346 |
| SRR9715739 | Root | 1371.074 |
| SRR9715742 | Root | 924.005 |
| SRR9715743 | Root | 966.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 896.601 |
| SRR8749028 | MeJA induced 9h | 437.605 |
| SRR8749029 | MeJA induced 9h | 637.120 |
| SRR8749030 | Uninduced | 594.015 |
| SRR8749031 | Uninduced | 451.882 |
| SRR8749032 | Uninduced | 925.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 640.992 |
| SRR8400027 | Control - Root | 570.914 |