Gene detail

Gene detail information of Glyur000022s00001993

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54770.1	9.00E-148	thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4)
NR	XP_004504342.1	0	PREDICTED: thiamine thiazole synthase, chloroplastic-like [Cicer arietinum]
COG	YP_006862753.1	4.00E-50	thiazole biosynthetic enzyme [Candidatus Nitrososphaera gargensis Ga9.2]
Swissprot	tr\|F6H7K5\|THI42_VITVI	0	Thiamine thiazole synthase 2, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_03158} (Precursor)
trEMBL	tr\|I1LSM4\|I1LSM4_SOYBN	0	Thiamine thiazole synthase, chloroplastic {ECO:0000256\|HAMAP-Rule:MF_03158}

Sequence

Transcript Sequence

>Glyur000022s00001993.1
GGCATCGATTTTACCATTTCTCTGCTACGTGTCCAGCATGCATTTTCTGGAAAAAATTCATCATAAATTTCNTCTCTCCATTTCCCCATAAATATCTCACCCCCATCATACTCCCCAAACCCACTACACAGACAGTGCTGCTACCTCAGTGAAACAAACAAATCAAACATGGCTTCTTCAACCATCGCTTCCTCCTTCCTCTACACCACCAAAACCCCAAACCCAGAGAGATCCTCCTTCCATCGGAACNTTAGCCTTGGCTCTCAACAACGACGGAGGCTCTGCGTGTCCATGTCAGCAGCAGCTTCTTCCGCATCACCTCCACCCTACGACCTTGGTTCGTTCAGGTTCGCACCCATCAAGGAATCGATCGTGTCACGCGAGATGACCCGCAGGTACATGACGGACATGGTCACCCATGCCGACACCGACGTCGTCATCGTAGGTGCCGGTTCCGCGGGATTGTCCTGTGCCTACGAGCTCAGCAAGAACCCCTCCGTCAAAATCGCCATCGTCGAACAATCNGTCAGCCCCGGTGGTGGCGCTTGGCTCGGTGGCCAACTCTTCTCTGCTATGGTTGTACGTAAGCCAGCGCATGTGTTCTTGGATGAGCTAGGTGTGGAGTATGATGAGCAGGACAACTACGTGGTGATCAAGCACGCCGCTCTCTTCACCTCCACCATCATGAGCAAGCTGTTAGCAAGGCCCAACGTGAAGCTTTTCAACGCCGTGGCGGCAGAGGACTTGATCGTGAAGAATGGGAGAGTTGGTGGGGTTGTGACCAACTGGGCCTTGGTTTCCATGAACCATGACACTCAGTCCTGCATGGACCCNAATGTCATGGAGGCTAAAGTGGTGGTGAGCTCTTGTGGCCATGATGGGCCTTTTGGTGCCACTGGGGTTAAGAGGCTCAAGAGTATTGGCTTGATTGATACTGTGCCTGGAATGAAGGCACTTGACATGAATGCTGCTGAGGATGCTATTGTTAGGCTCACTAGGGAGGTTGTGCCTGGAATGATCGTTACTGGGATGGAAGTTGCTGAGATTGATGGTGCTCCAAGGATGGGTCCAACATTTGGAGCAATGATGATATCAGGGCAGAAGGCAGCACATCTGGCGTTGAGATCACTGGGACTTCCTAATGCTGTGAATCATCAAAATCATGAGGAGGCAGGAAACGTCCACCCTGAGCTTGTCCTCGCTGCTGCTGAATCTGCTGAAATTGCAGACGCTTGAGGATCAATGTTGCATATATATATTTAGTGTCAAAATTCCCGTAGCCAGAAATAATACCCTCTTGTTAGTAGTGATGTTGGGCTGGTTGNTGTTACTCTGTCTGTAATCCGTATGAGGTTTTGTTAATAACATGGATGCCTTTGCCAACTCCTCCTATTTCTCTCCACTCCAGGCCCAATTGAATTGGGCTTTATTTTCTTCTGAGTTATAGAGTATTTAAATAATTTNAAAATGTTAAATTTAATGGAAAATATCAATGCAAATCTTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	171093	174001	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006950 response to stress

GO:0009228 thiamine biosynthetic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00001993.1	PF01946.12	Thi4	70	303	1.30E-103

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	827.483
SRR1783600	control	830.208
SRR1783602	moderate drought stress	1226.544
SRR1811619	moderate drought stress	1218.824

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	675.980
DRR006520	Root Summer glycyrrhizin high producing strain	667.354
DRR006521	Root Winter glycyrrhizin high producing strain	170.070
DRR006522	Root Winter glycyrrhizin high producing strain	166.290
DRR006523	Root Summer glycyrrhizin low producing strain	573.481
DRR006524	Root Summer glycyrrhizin low producing strain	572.883
DRR006525	Leaf Summer glycyrrhizin high producing strain	311.060
DRR006526	Leaf Summer glycyrrhizin high producing strain	309.765

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	552.390
SRR2868004	Drought Stress (root)	644.786
SRR2967015	Control (root)	647.763

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.643
SRR9715740	Leaf	42.166
SRR9715741	Leaf	33.081
SRR9715739	Root	2232.514
SRR9715742	Root	946.237
SRR9715743	Root	1166.246

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.194
SRR8749028	MeJA induced 9h	4.126
SRR8749029	MeJA induced 9h	4.338
SRR8749030	Uninduced	3.151
SRR8749031	Uninduced	0.827
SRR8749032	Uninduced	4.518

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	986.573
SRR8400027	Control - Root	1043.443