Gene detail

Gene detail information of Glyur000022s00001988

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G50940.1	9.00E-134	electron transfer flavoprotein alpha
NR	XP_004505448.1	0	PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Cicer arietinum]
COG	YP_004130549.1	9.00E-101	electron transfer flavoprotein subunit alpha [Taylorella equigenitalis MCE9]
Swissprot	tr\|Q9C6I6\|ETFA_ARATH	2.00E-178	Electron transfer flavoprotein subunit alpha, mitochondrial (Precursor)
trEMBL	tr\|I1KEH3\|I1KEH3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G42140.1}

Sequence

Transcript Sequence

>Glyur000022s00001988.1
ATGGCGACTCGCGTGATCCTCGGAGCAATCAAGAAACGCACCGTTTTGTTCCCCCTTCGCTCCTCCATTTCCTCTTCTCGACACGGTAGCACGCTGGTTGTGGCGGAGCACGAAGGTGGTGCCATCAAACCCCCTTCTCTCTCTGCACTCGCGGCTGCCACGTGTCTCCCCGATAACCACTCTTCCGTTTCTCTCCTCTTGGCCGGCTCAGGTCCTTCTCTCCATCAGGCTGCTTCGCACGCTGCTTCCTGCCACCCTTCAATCTCTCAGGTGCTGGTGGCGGATTCAGATGCATTCAANAGCGCTCTGGCAGAACCCTGGGCTAAACTTGTCCACTTGGTTCAGCNGACAGGTGGTTACTCTCATATAATCGCCGCTTCAAATTCTTTTGGGAAAAATGTCATGCCACGCGCTGCTGCCCTTTTAGATGTTTCTCCGGTTACTGATGTTACCGCAATTTCCGATTCTCATACTTTTGTAAGGCCAATATATGCTGGAAATGCACTTTGTACTGTCCGATATACTGGTGCCAATCCTTGTATATTAACGATTAGATCAACATCTTTTCCTGTTTCCCAGAAGTCAGTTGACTCAAAATCTAATGAGGCTTCAATATCTCAGGTTGACCTTTCAACCTTTGGTGAAGATCTGGGCAAATCTAGGTATATATCTCAAACTTCTCAGGATGATGAAGGACCAGATCTTGGGAATGCACGAATTGTAGTTACTGGTGGTCGTGCACTAAAGAGTGCTGAGAACTTTAAATTGATAGAAAATCTGGCCAAGAAACTTGGTGCTGCTGTTGGTGCCACTCGTGCTGCTGTTGATGCAGGATTTGTTCCTAATGATCTCCAGGTTGGGCAAACGGGAAAGATTGTTGCTCCCGAGCTCTACATGGCTTTTGGTGTGTCTGGAGCTATTCAACACTTGGCTGGGATGAGGGATTCCAAGGTCATTGTTGCTGTGAACAGTGATGCTGATGCTCCTATATTTCAGGTTGCTGATTATGGACTCGTAGGAGATTTGTTTGAGGTGATACCAGAGTTGTTGGAGAAGCTTCCCGAGAAAAAATAAAAACGTTGACTTGCATCTCTNTATACTAACAGTTGCTGAATGTAATCATGTATCATCCTTGGAATCACAAATTCACAATAGATTTGTTTACCTGAAAGAAGAAATGATGTTTATAGATTTTATAGATGGATCGCTATAATACCAGANGGCTCATTTTACACTATTATTACAGTGGATAAAAATAATATTCGATCACATAACGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	146636	150399	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0009055 electron carrier activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00001988.1	PF01012.16	ETF	31	190	1.10E-33
Glyur000022s00001988.1	PF00766.14	ETF_alpha	233	317	5.10E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.735
SRR1783600	control	7.792
SRR1783602	moderate drought stress	8.601
SRR1811619	moderate drought stress	8.815

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.340
DRR006520	Root Summer glycyrrhizin high producing strain	13.029
DRR006521	Root Winter glycyrrhizin high producing strain	6.392
DRR006522	Root Winter glycyrrhizin high producing strain	6.236
DRR006523	Root Summer glycyrrhizin low producing strain	9.457
DRR006524	Root Summer glycyrrhizin low producing strain	9.365
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.685
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.778

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.911
SRR2868004	Drought Stress (root)	23.615
SRR2967015	Control (root)	20.969

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.929
SRR9715740	Leaf	13.554
SRR9715741	Leaf	19.688
SRR9715739	Root	7.647
SRR9715742	Root	8.973
SRR9715743	Root	8.337

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.990
SRR8749028	MeJA induced 9h	22.920
SRR8749029	MeJA induced 9h	19.463
SRR8749030	Uninduced	32.621
SRR8749031	Uninduced	48.417
SRR8749032	Uninduced	39.917

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.335
SRR8400027	Control - Root	18.138