Gene detail

Gene detail information of Glyur000022s00001981

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23410.1	8.00E-108	fatty alcohol oxidase 3
NR	EMS51759.1	0	Long-chain-alcohol oxidase FAO2 [Triticum urartu]
COG	YP_003835264.1	4.00E-31	glucose-methanol-choline oxidoreductase [Micromonospora aurantiaca ATCC 27029]
Swissprot	tr\|B5WWZ8\|FAO1_LOTJA	2.00E-175	Long-chain-alcohol oxidase FAO1
trEMBL	tr\|M7ZUG8\|M7ZUG8_TRIUA	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:TRIUR3_24431-P1}

Sequence

Transcript Sequence

>Glyur000022s00001981.1
CTTTAATTTTTTCCCTCTAATATTTTTCATATCTGTTAGTACTNTTGTGTATTTTTATTAGTCAGACAGGCACGTATTATATATATTAAAGTGGTTAGCTGGTTACCATCTCACACATCAGCGATCAATCACAAATTAAGAGAAGAAGAGGGAGATGGGGAGAAGGGAGTCATGCCATCCATTGTTGAGGGATACTAGTGGGAGCAGAGGGAATAACATTAGCAAATACAGACATGGGTTTTCTGCGGCTGAGATGGAGTCACTTGCTAGCATATGTGAGNCTGTGCTGCCTCCATTGCCATTGGATTCTCTGAAGAAGATCATCAGAGTGGAAGACCAAGCCATTGTTAATGATGTACGATCTTTCTGGAACACTTCTGCTTCTCGCTATCCAATCCCTCATGAGGTTGCTGAGCTGATAGTGAAGAGGGGACTAATAGAAGCAGTAATACTGATTAGAGTGGTTTTATGGCTTCTGGCAACGAGGTTGGGAACCTTATTGCTCTGCGGTTTGCTCTGTCTCAGTGAGAAATGGCCCTTTATCAACAACTTCTCAAGCATGTCTTTGGAGAAAAGAGAAAAGATTCTGCAGAAGTGGCTGAAGCACAGGTTCCTCACACCCATTAGACTCGCATTTGCTTACCTCAAAATCATGTGCCTCTATGTTTTTTTCTCTTGGGTTGATGAAAATGGTGATAACCCAGCATGGAAAGCCATTGGATATGAAGTATCAGGTGATGAGGAAGAATTGACCAATAATGCCTCCTCCAAAAGGAGGCCCCTTGAAAAGGGGATTATAGAAACCATGCATGAAACTGACTCAACTCTTCAACAATCCCTTGCTGAGAAAGGCCTAAATGTTACACTGGACCCCAAAAGCAATACCCTCAGAGTGAAATGTGATGCAATAGTTGTTGGGTCTGGTTGTGGGGGAGGTGTTGCAGCTTCTGTCCTTTCAAGTGCTGGCCACAAGGTGGTTGTTCTAGAGAAAGGAAACTACTTTGTTCCGCAGGATTATTCATCTCTAGAAGGGCCTTCATTGGATCAGTTATACGAAGGTGGAGGGCTCCTAGCTTCTGTGGACTCGAGAATAATGGTTGTGGCAGGATCAACAGTTGGTGGTGGCTCTGCAAAGAAATGCTTGGGAGTGCTGGCAAAGGCTTTAGGCAGCAAAGTCACAATGAAGCTACAAATTGAGGCAAAAGTGACAGTTTCTGCAGGTGGGGCAATTCTCACACCCCCATTGATGATCTCTAGTGGGTTAAAGAATAAGAACATTGGAAGGAACCTTCATCTCCACCCTGTGCTAATGACATGGGGATACTTCCCAGAATCAATCTCAGACCTGAAAGGCAAAGTCTATGAGGGAGGTATAATCACGTCTGTCCATAAGGTTCCATCATCAGAAGATCACTCAAAATCAGATGATGATGATGCAGCAACAAGAGCCATAATTGAGACACCTTCATTAGGACCAGCATCCTTTGCTGCACTGTGTCCTTGGGAATCTGGACTTGACTTCAAACAAAGGATGCTGAATTACCCAAGAACTGCACATTTGATCACAATAATCAGAGACAAGGCCTGTGGACAAGTGACAAGAGAGGGAAGGATCAGCTACAGAATGANTGAAACTGACAGAGAAAACATGAGGGCTGGTTTGCAACAAGCATTGAGGATTCTAATAGCAGCAGGAGCAGTTGAAGTAGGCACACACAGGAGTGATGGTCAGAGAATCAAGTGTGGTAGTAGTGAGAGTGAAGTGGAAGAGTTCTTAGATAGTGTGTGTCCAGTGGAGGGAGCAGTGTTACCAGGTGATGAGAAATGGAGNTTGTGTACCTCTGCACACCAAATGGGGAGTTGTAGAATGGGAGTGAGTGAAGATGAAGGGGGTGTTGATGAGAATGGNGAGAGCTGGGAGGCAGAAGGGTTGTTTGTTTGTGATGCAAGTGTGCTTCCAACTGCTGTTGGTGTCAACCCCATGATCACAATCCTATCGACTGCATACTGTATCTCAAATAGAATTGTAGATTATCTTAAAACTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	103531	107275	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00001981.1	PF13450.1	NAD_binding_8	253	283	8.10E-05
Glyur000022s00001981.1	PF00732.14	GMC_oxred_N	326	384	1.20E-11
Glyur000022s00001981.1	PF05199.8	GMC_oxred_C	486	619	4.80E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.482
SRR1783600	control	5.599
SRR1783602	moderate drought stress	1.622
SRR1811619	moderate drought stress	1.686

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.840
DRR006520	Root Summer glycyrrhizin high producing strain	1.843
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.810
DRR006524	Root Summer glycyrrhizin low producing strain	0.810
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.728
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.868

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.567
SRR2868004	Drought Stress (root)	11.023
SRR2967015	Control (root)	12.330

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.471
SRR9715740	Leaf	4.245
SRR9715741	Leaf	1.327
SRR9715739	Root	1.078
SRR9715742	Root	3.763
SRR9715743	Root	3.326

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.499
SRR8749028	MeJA induced 9h	1.354
SRR8749029	MeJA induced 9h	1.153
SRR8749030	Uninduced	0.553
SRR8749031	Uninduced	0.597
SRR8749032	Uninduced	0.493

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.055
SRR8400027	Control - Root	6.848