Gene detail

Gene detail information of Glyur000022s00001979

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G20360.1	RAB GTPase homolog E1B
NR	XP_003525588.1	PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
COG	YP_007143371.1	translation elongation factor Tu [Crinalium epipsammum PCC 9333]
Swissprot	tr\|P46280\|EFTU2_SOYBN	Elongation factor Tu, chloroplastic (Precursor)
trEMBL	tr\|K7KMT9\|K7KMT9_SOYBN	Elongation factor Tu {ECO:0000256\|RuleBase:RU004061}

Sequence

Transcript Sequence

>Glyur000022s00001979.1
ATGGCAATTTCTTCAGCAACAGCAACAGCAGCAGCTTCCTCAAAGCTCCTTCACCCACGCGCCTCTCCTTCTCCCTCTCACTACTCTCCCTCCCCCTCTAACTGTCTCTTCCTCAGAGCAGCTCATCCCATACCCACAACCCACCTTTCCTCCTCTTTCATCAACCCCTCCACAATCCCCCTCAATCCGCCTCAGCTAACCACCNCTCGCCGCCCCTCCTTCACCGTCCGTGCGGCACGTGGCAAGTTCGAGCGTAAGAAGCCGCACGTGAACATCGGCACCATCGGCCACGTGGACCACGGCAAAACCACCCTAACTGCAGCCCTCACCATGGCCCTAGCCTCCCTCGGCAACAGCGCCCCGAAGAAGTACGACGAAATCGACGCCGCGCCTGAGGAACGCGCGCGTGGAATCACAATCAACACCGCCACCGTGGAGTACGAGACCGAGAACCGCCACTACGCCCACGTGGACTGCCCCGGCCACGCCGATTACGTCAAGAACATGATCACCGGCGCCGCCCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGACCCATGCCTCAGACCAAGGAGCACATCCTGTTGGCGAAACAAGTGGGTGTCCCAAACATGGTGGTGTTCCTCAACAAGCAGGACCAGGTCGANGACGAGGAGCTTCTTCAGCTTGTTGAATTGGAGGTTCGTGAGCTTCTTTCATCTTATGAATTCCCCGGTGACGATGTTCCCATCATTTCTGGTTCTGCCCTTTTGGCTTTGGAAGCTTTAATGGCGAACCCTTCAATCAAACGTGGTGAGAATCAATGGGTTGATAAAATCTATGACCTCATGGAAGCTGTGGATAGCTACATTCCTATCCCTCAGCGCCAAACTGAACTNCCCTTTTTGCTTGCAATTGAAGACGTGTTCTCCATCACCGGTCGTGGAACCGTCGCCACCGGCCGTGTCGAGAGGGGCACGGTTAGGGTTGGTGAGACTGTTGAAATTGTTGGCGTGAGGGAAACTAGGAACACCACCGTGACTGGGGTGGAGATGTTCCAGAAGATTCTCGATGAGGCCATGGCTGGGGATAATGTGGGGTTGTTGCTTAGGGGTATTCAGAAGATTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCTGGGACCATTACCCCTCACACCAAGTTCTCTGCGATTGTATATGTGTTGAAGAAGGAAGAAGGTGGAAGGCACTCTCCCTTCTTTGCTGGGTATAGGCCACAGTTCTACATGAGGACTACTGATGTCACTGGCAAAGTGACCAGCATTATGAATGATAAGGATGAGGAGTCCAAGATGGTGATGCCCGGTGACCGCGTTAAGATGGTGGTCGAACTTATTGTCCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGGGAAGGCGGCAAAACTGTTGGAGCTGGTGTTATCCAATCTATCATTGAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	80081	81541	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006414 translational elongation

cellular_component
GO:0005622 intracellular

molecular_function

GO:0003746 translation elongation factor activity

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00001979.1	PF00009.22	GTP_EFTU	87	288	4.00E-60
Glyur000022s00001979.1	PF03144.20	GTP_EFTU_D2	312	381	2.70E-18
Glyur000022s00001979.1	PF03143.12	GTP_EFTU_D3	385	484	1.30E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	93.264
SRR1783600	control	92.754
SRR1783602	moderate drought stress	71.075
SRR1811619	moderate drought stress	69.272

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	94.932
DRR006520	Root Summer glycyrrhizin high producing strain	94.598
DRR006521	Root Winter glycyrrhizin high producing strain	60.800
DRR006522	Root Winter glycyrrhizin high producing strain	59.475
DRR006523	Root Summer glycyrrhizin low producing strain	77.366
DRR006524	Root Summer glycyrrhizin low producing strain	77.421
DRR006525	Leaf Summer glycyrrhizin high producing strain	264.126
DRR006526	Leaf Summer glycyrrhizin high producing strain	268.666

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	80.803
SRR2868004	Drought Stress (root)	73.812
SRR2967015	Control (root)	63.517

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	194.670
SRR9715740	Leaf	279.210
SRR9715741	Leaf	168.163
SRR9715739	Root	129.232
SRR9715742	Root	76.911
SRR9715743	Root	84.955

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.652
SRR8749028	MeJA induced 9h	13.617
SRR8749029	MeJA induced 9h	13.842
SRR8749030	Uninduced	5.760
SRR8749031	Uninduced	1.500
SRR8749032	Uninduced	4.422

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	91.285
SRR8400027	Control - Root	101.995