Gene detail information of Glyur000022s00001975 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12690.2 | 3.00E-68 | Plant protein of unknown function (DUF868) |
| NR | KEH31766.1 | 1.23E-180 | protein phosphatase 2c, putative [Medicago truncatula] |
| Swissprot | tr|Q9S7C9|ESCA_ARATH | 3.00E-13 | Putative DNA-binding protein ESCAROLA |
| trEMBL | tr|A0A072UQY7|A0A072UQY7_MEDTR | 0 | Protein phosphatase 2c, putative {ECO:0000313|EMBL:KEH31766.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00022 | 71710 | 73825 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000022s00001975.1 | PF05910.7 | DUF868 | 115 | 377 | 3.10E-88 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.531 |
| SRR1783600 | control | 6.471 |
| SRR1783602 | moderate drought stress | 17.430 |
| SRR1811619 | moderate drought stress | 17.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.973 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.771 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.840 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.845 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.070 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.283 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.351 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.334 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.856 |
| SRR2868004 | Drought Stress (root) | 3.233 |
| SRR2967015 | Control (root) | 5.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.396 |
| SRR9715740 | Leaf | 1.357 |
| SRR9715741 | Leaf | 1.312 |
| SRR9715739 | Root | 5.917 |
| SRR9715742 | Root | 2.931 |
| SRR9715743 | Root | 4.461 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.674 |
| SRR8749028 | MeJA induced 9h | 0.531 |
| SRR8749029 | MeJA induced 9h | 0.112 |
| SRR8749030 | Uninduced | 0.411 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.794 |
| SRR8400027 | Control - Root | 10.120 |