Gene detail

Gene detail information of Glyur000022s00001965.3

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24740.1	0	FUS3-complementing gene 2
NR	XP_007155494.1	0	hypothetical protein PHAVU_003G206200g [Phaseolus vulgaris]
COG	YP_008147087.1	3.00E-16	hypothetical protein SCE1572_03120 [Sorangium cellulosum So0157-2]
Swissprot	tr\|P51567\|AFC2_ARATH	0	Serine/threonine-protein kinase AFC2
trEMBL	tr\|V7CDP1\|V7CDP1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW27488.1}

Sequence

Transcript Sequence

>Glyur000022s00001965.3
TTAAAATTAGGGTTCCTATCGCCGAGGCACTATCTTCCTCAAAGCATTATCTTTTCTTTCATCCGAATTTCTCTCTCCTCAAAGTCTCTTCCTTTGAAGTTTTCGCAGTTCTCTGAATCATGGAGATGGAACGGGTCTTCGAATTTCCTCACACTCACATGGATCGGCGCCCACGAAAGAGGGCGAGGTTGGGCTGGGACGTCCCTGAGGTCCCCAAGGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGGGACTATTTCAAGCTATGCTCCTTCAGGGGGTCCCTCAGAACATACCACTAGTTCTCTTTTTGGNAAGGGAGTTGCTCAAAATGGTTCTCCCCCTTGGCGAGATGATGACAAAGATGGCCATTACATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAGATCCGTAACAAAATGGGTGAAGGNACTTTTGGGCAGGTGTTAGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATAAAAATTGTCCGTGGAATAAAGAAGTATCGTGAAGCAGCCATGATAGAAATTGAGATGTTGCAGCAACTTGGTAAAAATGATAAAGGAGGCAACCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTAATTATGCATGATTTGCNCATGATCCATACTGACCTAAAGCCGGAAAACATACTTTTAGTTTCACCAGAATATGTCAAAGTTCCTGACTACAAGAGTTCAACNAGATCACCAAACTCCTATTTCAAGAGGGTGCCCAAGTCAAGTGCTATAAAGGTTATTGATTTTGGCAGCACCACTTACGAGCGTGAAGATCAGAATTACATTGTCTCAACTCGTCATTATAGAGCACCTGAAGTTATCCTTGGTCTTGGCTGGAGTTATCCTTGTGATATATGGAGTGTGGGATGTATATTGGTTGAATTATGCACGGGTGAAGCTTTGTTTCAGACTCATGAGAATTTAGAGCACCTTGCCATGATGGAGAGGGTACTTGGTCCATTACCACAGCATATGTTGAAGAGAGTTGACCGACATGCTGACAAGTATGTTAGAAGAGGTAGATTAGACTGGCCTGAGGGTGCAGCCTCAAGGGAGAGTATTAAAGCTGTGATGAAGCTTCCTAGGCTTCAGAACCTAGTAATGCAGCATGTTGATCACTCAGCCGGTGATCTCATCCATCTGTTGCAGGGGTTACTTAGATATGACCCCTCTGAAAGACTTACGGCTAAGGAAGCCCTGAGACATTCCTTCTTTATGAGAGATCACCTAAGGAGATGAACAACCCATTACCGTCAGCCTGCTGCTGCACCATTGATTTCTTNAGATGGGTGCGTAAGAAGAGCCCATATCTTGGAAATGATGGTGGCTGCAAGTGTTGTTCCCAATTGAAACGGGGGAGTCCATGGTGCTGTTGAACTTTTCATCTTCGTCTTGGGATATAAGTGTCGGAGGATGGTTTTTCAGCAGCCTCCCCACTCCATTGCTTCGCCTGTCGATCCTTATNTAGAAATTTTGATTGAATGTATTCATACTGATGCAGAATCTGAATTCAATGTACAGAAGGAAAAAAAAATACAATTTTAACGTTTATGATATGTTGAGAATTGATGACTTATAGGCACCAGTTCATATATCAGCCTGATGTGTTTGAATTTTAGCCGTGGTGGGATGATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	19775	23790	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00001965.3	PF00069.20	Pkinase	98	176	2.50E-08
Glyur000022s00001965.3	PF00069.20	Pkinase	177	386	2.80E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	74.897
SRR1783600	control	75.857
SRR1783602	moderate drought stress	81.550
SRR1811619	moderate drought stress	79.303

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	90.572
DRR006520	Root Summer glycyrrhizin high producing strain	89.214
DRR006521	Root Winter glycyrrhizin high producing strain	89.763
DRR006522	Root Winter glycyrrhizin high producing strain	86.238
DRR006523	Root Summer glycyrrhizin low producing strain	99.998
DRR006524	Root Summer glycyrrhizin low producing strain	100.347
DRR006525	Leaf Summer glycyrrhizin high producing strain	54.340
DRR006526	Leaf Summer glycyrrhizin high producing strain	53.296

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	159.697
SRR2868004	Drought Stress (root)	194.236
SRR2967015	Control (root)	182.977

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	81.394
SRR9715740	Leaf	105.636
SRR9715741	Leaf	107.979
SRR9715739	Root	33.171
SRR9715742	Root	52.262
SRR9715743	Root	46.416

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	71.677
SRR8749028	MeJA induced 9h	103.856
SRR8749029	MeJA induced 9h	74.969
SRR8749030	Uninduced	86.319
SRR8749031	Uninduced	108.763
SRR8749032	Uninduced	102.172

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	164.934
SRR8400027	Control - Root	151.475