Gene detail

Gene detail information of Glyur000021s00002769

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45250.1	1.00E-31	Disease resistance protein (TIR-NBS-LRR class) family
NR	XP_004510400.1	0	PREDICTED: uncharacterized protein LOC101515491 [Cicer arietinum]
COG	YP_723316.1	4.00E-11	small GTP-binding protein [Trichodesmium erythraeum IMS101]
Swissprot	tr\|O23530\|SNC1_ARATH	2.00E-23	Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1
trEMBL	tr\|W0M168\|W0M168_CICAR	0	NBS-LRR protein {ECO:0000313\|EMBL:AHG29001.1}

Sequence

Transcript Sequence

>Glyur000021s00002769.1
ATGAGAGGGGATGAGTCTCAAGTCATTGAGAATATTGTGGAAGATATTCGGACAAAGTTGTCCCTGTTGTATCCTAATGAACAAGAAGACCTTATCCACATTGATGAAATCAATAAAAACATTGAATCATTACCAAAGAAACATTCAAGAATTGGGATTTGGGGCATGGGTGGAATAGGAAAAACCACCATCGCAAGGCAGATGTTTGCCAAGCACTTTGCACAATATGACAGTGTGTGTTTCTTGGAAAAAGTTAGTGAAGAATTAGAAAGGTTTGGACTCGCACACGTACGTAATAAGCTTCTCGGTGAGCTATTAAAGCAACAAATTACCACTTCCGATGTTCTTGGAGGCAAATTCATTAAGAGGAGGCTNAGTGGTAAACAAGTTTTCATTGTACTTGATGACGTGGATGATGCTACACAGCTAGGAGATTTGTGTGGATCAGAACTTGGTGACCTTGGACCAAACAGTAGACTTATTATCACAACAACAAATAGGCACNTGCTTGAAGGAAGAGATTATAAGATATACGAGGTCGCTAAATGGAACAATAGAATACAAATGCCCGACTTACTTCAAAAAATGGCTTTGGATATAGTTAGGTACAAAAGAGATCGCACTAGTAGAGACCCAGGAAAGCGAAGCCGATTGAGGGATAATGAAGAAGTTTGTGATGTACTTCAAAATAACAAGGAACTTGTGAATTTAGAGGCAATCGACCTGAGTGAGTGCAAAAAGTTGATCAAGCTCCCTGATTTGTCTAGAGCTTCAAAACTCAAATGGCTCTATCTGTCCGGTTGTGAAAGTNTACGTGAAGTTCCNCCTTGTGTTTTTTCTAAGGACACACTTGTTACTTTGCTGCTGGATAGGTGTAAAAAACTGCAAAGTCTTACAAGTGAGAGGCATTTAACATCTCTGGAGAAGATCAATGTCTATGGCTGCTTTAGACTTAAGCAATTCTCANTGTCCTCGGATTCAATTGAAAGGTTGGACTTAAGCAATACAGGAGTCAAAACATTAGACTCATCAATTGGTGGTATGAGCAAGCTCGTGTGGCTCANTTTAGAAGGTTTAAGACTTACAAATCTACCGAATGAAGTGTCTCACCTGGGATCACTTACTGAGCTTTGCCTTTCCAACTGCAAAATAGTAACCAAGTCAAAGTTAGAAGCCCTGCTTGATGGCTTGAGATCATTAAAAATACTATATTTAAAAGATTGTTGTAACTTGTTTNAACTCCCTGCCAACATCAGTTCCTTGTCATCATTGTCTGAATTAAGACTAGATGGAAGCATTGTGGAGATGTTACCCACAGGCATCAAGAATCTCTCAAAGCTAGAAGTTCTGTCCGTAGACTATTGCAAGAAGCTTGGTTGTCTGCCGGAGCTTCCTCCACGCATCAAAGAGTTTCATGCCGACAACTGCGCCTCATTGGNGACNGTATCCACTTTGAAGACNTTCTCAAAAAGCATGAAAGGAGAGAAGAAATATATTTCATTCATGAATGACAAGGAATTGGATGGACCTTCACTAGACCGTATTANGGAAGATGCCATATTAACAATGAAGAGTGCTGCATTTCACAATGTGTTAGTAAGAAAAAACAGTATGCAAAACTGCACCAGTGACAGTTATAACAGTGCCGAGGTTTGTTTACCAGGAAGCAAAGTTCCNAGCCAGTTCAAGTACCGAACAACAGATTCCTCCTCCATTACCGTTGGACTTGCCGACCTTTCCGACTCGTTGGGATTTATTTTCTCAGTTGTTGTTTCTCCACCCTATGCAATTGGTGCTAAAATCCAGTGTCAGTGCTATTCAGAAGATGGCAGAAAGGTGGGATATGCGTCTAAGTGGCATCCTAAAGCTATTAGNAGTTTGGATCTGGATCATGTTTTTGTGTGGTATGATTCATGCCAATATGACAGCAATGAGGAAAAAAAGGTTTGCTTTGAATTTTGTGTTACAACTGATATGGGAGAGAGTGATATTGGGTTTCTCAGTATAAAAGAGTGTGGGATCTGCCCAATTTATACTTCAGAGTTTCCGAGGCTTGTAGACACAATAAATTTGGACGAGAAAATAGTATCAGATGTGAATGATGCAATGCAGTTTTTCTCAAAATCAATTGAAAGAAATGATGAAAACAACGGAATTGACTCAACTCAAGATGAGCAGGAAAACAAAGGCAAAGGTGGCCAGCAGCCACAGAATCAAGAATTGGACAGCTGCTTAACTGGTCCGTTGAGGCGCCTGTGGAGATTAATCAGATACTTGTGCAGAATATTTAAGTACTTGTGGAGATTAATCAGGGTCAACTTGATAGGAGGGAAAACAGAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00021	595258	599151	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000021s00002769.1	PF00931.17	NB-ARC	33	167	5.50E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.330
SRR1783600	control	0.335
SRR1783602	moderate drought stress	0.272
SRR1811619	moderate drought stress	0.284

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.990
DRR006520	Root Summer glycyrrhizin high producing strain	0.966
DRR006521	Root Winter glycyrrhizin high producing strain	0.047
DRR006522	Root Winter glycyrrhizin high producing strain	0.046
DRR006523	Root Summer glycyrrhizin low producing strain	0.413
DRR006524	Root Summer glycyrrhizin low producing strain	0.433
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.191
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.144

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.270
SRR2868004	Drought Stress (root)	4.825
SRR2967015	Control (root)	3.724

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.267
SRR9715740	Leaf	1.521
SRR9715741	Leaf	1.449
SRR9715739	Root	0.148
SRR9715742	Root	0.612
SRR9715743	Root	0.336

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.856
SRR8749028	MeJA induced 9h	9.942
SRR8749029	MeJA induced 9h	1.544
SRR8749030	Uninduced	4.822
SRR8749031	Uninduced	1.590
SRR8749032	Uninduced	0.820

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.276
SRR8400027	Control - Root	2.196