Gene detail

Gene detail information of Glyur000021s00002765

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33050.3	4.00E-124	calmodulin-binding family protein
NR	KHN32702.1	0	Protein IQ-DOMAIN 1 [Glycine soja]
COG	YP_006808982.1	6.00E-09	hypothetical protein O3I_020245 [Nocardia brasiliensis ATCC 700358]
Swissprot	tr\|Q9SF32\|IQD1_ARATH	1.00E-22	Protein IQ-DOMAIN 1
trEMBL	tr\|F6HXZ0\|F6HXZ0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59313.1}

Sequence

Transcript Sequence

>Glyur000021s00002765.1
ATGCAAATGGTAACAATAAGACCCGTGGAGTATGAGTCTAAGGAAAAAAGAGAGGTTGCATTGAGAACTATGAGCTTCAAGAAGGGAAGAAATTTCGATGAATTGTATAAACCTGATGATGAGGTTACTACTGAGGAATCAAAATGCTCAAAGAGAAAAAAGGTGGGGAATCTGAAGCTGCAAACCACATTCTCATTCAAGTATCTACTTTCAGATAATACTGGTTCAAAGGAGGGTGTTGATCATGACTTGTTCAATAAGCAAAACCCCACANTTTTGTTACCAAAGCCAGAAATTCTGTTCTCATCACCAAAGTCCATTGGGGAGCTTGATGTAGCTGCAATAAAGCTGCAGAAGTTTTACAAGGGCTACAGGACTAGGAGAAATTTGGCAGATTGTGCAGTTGTTTGTGAGGAGCTATGGTGGAAGGCTTTAGACTTTGCTGCTCTTAGCCGGTGCTCTATATCACACTTTGACTCGGTTAAATCAGAAACAGCTCTTTCAAAATGGGCAAGAGCTAGGACTATGGCTGCTAAGATTGATCCCCGTCATCGATATGGGCACAACCTACACTTGTACTATGATGTTTGGTTTCATAGCCAGAGTTCACAGCCATTTTTCTACTGGTTGGATGTTGGAGATGGAAAAGAAGTAAATGTTGAGGAGTGCCCAAGAAGTGAATTACAGAGGCAGTGCATAAAGTACCTTGGACCCAAAGAAAGGGAGGCATATGAAGTGGTTGTAGAGGGAGGAAGGCTTACTTATAGAAAAAGCAAGGACCTTGTACACACTTCTGAGGGGTCTAAGTGGATTTTTGTTCTTAGCTCATCTAGAGTTTTGTACGTTGGGGAGAAGAAGAAAGGCCAATTTCAGCACTCAAGTTTTCTAGCTGGGGGTGCTACTATTGCATCTGGAAGATTAGTTGCCCAAAATGGAGTTCTTGATGCTATATGGCCCTATAGCGGTCATTACTGTCCCACAAAGAAGAATTTCATGGAATTCATAGGCTTCTTGATGGACCATAATGTGGACTTGACAAATGTAAAGAAGTATGCAATTGATGATGATGTCCCACCTTCAAAACCTGATGACAAGGANCTGCAGTTTGAGGCCACAGAGGCTAATGCAGCTTCCAAAGACTCTGCCACTGCCAAAAGGTGCAGTCAAGAAGACAATGTGGGAACTTCACAACACAAAGAGAGGAAGCCATTGTCAAGTAAATGGACCACTGGAGCTGGTCCTAGGATTGGTTGTGTGAGGGAGTACCCAACAACACTCCANGTTAAGGCACTTGAACAGCTCAATCTTTCACCAAGAGTCAACCCTGGAAAAGTTGCTGCCAGGACACCCATTCCCTCACCAAGGCCTAGTCCAAAAATCCACCTTTCCCCAAGACTTGAGAAGGGCAGTGATAAGAGTAAGAGAAAGTGGAAGCTATGGAGGAATTCTTCAGAGGGTTTTGGGTTTNGATCCTCTGTGAAGAAGGGTCACATTGGTGGTGCTCATGATAGTAAGTCTTATTGTTCTTCGTTTGTGGTGGATGAAGAAGCATTTGCTGCTGCAATGGCTGCTGTGGTACGAACTCCACACAAAGACTTCATGGTGATCAGGATGGAATGGGCTACCATTCGCATCCAGGCTGCTTTTCGAGGCTTCTTGGCAAGGCGAGCTTTGAGGGCCCTGAGGGCAGTGGTGAGGCTGCAAGCTATATTTCGTGGCCGAAAAGTGAGAAAGCAAGCAGCTGTTACTTTAAGGTGCATGCAGGCTCTTGTGAGAGTTCAAGCACGTGTCAAGGCAATGAATGTGAGCAAGTCACCAGAAGGGAAAGCNGAGCAGAAACTATTAAATGAGAGGCGCAACGAAGCTGATCCTGTTAAGCAAGCGGAGCAAGGGTGGTGTGACATTCCAGGAACTGTGGAAGAAGTTAAAGTAAGACTAAAAAAGAGGCATGAAGGAGCAATTAAGAGGGAAAGAAAAATGGCATACTCTATCTTTGCCCAGCAATCAACAGTGAGTGCTAGTCCAAACTCAAGAGCTGCTAAGCCATTCACTCCTCTCAAACACCGCAGCTTAGACGATAAGAGCTTGTTAGAACGCTGGATGGCGGCTAAGCCATGGGAGAGCAGGTTGATGGGAGAGAACTATTTGGACTCACCTGACATGACTCCATTGTCCAGGAAAAGTGATGATCGTGTTCTCCCCTTTAACTCATATNAACAAAATGGATTAGTCAAATCAAGAAGGAATGGTGTGACAACCAGGATTTCAACTAAATCTCTTGCAACCAGTCAATCAACTCCATCGTCTTCGGCCGTAAGCTCCGATTGCATGTATGATGATAGCCCTCTATCAACTTCATGCACATCNGACTCACCACCATCTCTACCATCTACCAACACTGCTACGGTGGAAGCGATGACAGAGGAAAGAAAAGTCGGTAAACCAAGCTACATGAATTTGACAGCATCAACCAAAGCTAAGCTGAAAGCTTGTAGATGTTCTTCTCAGAATTCGNAGAGACTCTTTATGGATGATTATCTGTATCATAGCGCGAAAACAGACTTTCTAAGTGGAGATACTAGAAGCAGTCCTGGTTCCTTTCCTTCATCAGCTAATAGATTGAAGGATCTCTGTGCAACGCCCCTAAGGGCAAGTTATCAAAAACGATATACACCAGAAGATAAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00021	568582	575849	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000021s00002765.1	PF00612.22	IQ	113	129	0.0027
Glyur000021s00002765.1	PF00612.22	IQ	540	559	0.00011
Glyur000021s00002765.1	PF00612.22	IQ	562	579	0.088

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.705
SRR1783600	control	0.711
SRR1783602	moderate drought stress	0.544
SRR1811619	moderate drought stress	0.567

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.668
DRR006520	Root Summer glycyrrhizin high producing strain	1.629
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.252
DRR006524	Root Summer glycyrrhizin low producing strain	0.267
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.254
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.334

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.129
SRR2868004	Drought Stress (root)	1.910
SRR2967015	Control (root)	2.659

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.859
SRR9715740	Leaf	0.187
SRR9715741	Leaf	0.221
SRR9715739	Root	0.346
SRR9715742	Root	0.207
SRR9715743	Root	0.429

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.275
SRR8749028	MeJA induced 9h	12.490
SRR8749029	MeJA induced 9h	2.361
SRR8749030	Uninduced	18.649
SRR8749031	Uninduced	0.907
SRR8749032	Uninduced	0.242

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.121
SRR8400027	Control - Root	2.706