Gene detail information of Glyur000021s00002758 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53840.1 | 5.00E-15 | F-box/RNI-like/FBD-like domains-containing protein |
| NR | XP_007135540.1 | 0 | hypothetical protein PHAVU_010G138000g [Phaseolus vulgaris] |
| Swissprot | tr|Q6DBN6|FDL6_ARATH | 4.00E-17 | F-box/FBD/LRR-repeat protein At1g51370 |
| trEMBL | tr|V7APM1|V7APM1_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW07534.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00021 | 537966 | 540213 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000021s00002758.1 | PF00646.28 | F-box | 53 | 92 | 2.50E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.535 |
| SRR1783600 | control | 10.774 |
| SRR1783602 | moderate drought stress | 9.970 |
| SRR1811619 | moderate drought stress | 10.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.401 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.542 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.590 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.212 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.261 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.719 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.394 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.877 |
| SRR2868004 | Drought Stress (root) | 19.224 |
| SRR2967015 | Control (root) | 19.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.906 |
| SRR9715740 | Leaf | 13.315 |
| SRR9715741 | Leaf | 18.957 |
| SRR9715739 | Root | 6.891 |
| SRR9715742 | Root | 14.421 |
| SRR9715743 | Root | 15.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.685 |
| SRR8749028 | MeJA induced 9h | 45.673 |
| SRR8749029 | MeJA induced 9h | 4.911 |
| SRR8749030 | Uninduced | 45.642 |
| SRR8749031 | Uninduced | 6.959 |
| SRR8749032 | Uninduced | 3.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.783 |
| SRR8400027 | Control - Root | 20.270 |