Gene detail

Gene detail information of Glyur000021s00002750

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G13860.1	heat shock protein 60-3A
NR	XP_003531614.1	PREDICTED: chaperonin CPN60-like 2, mitochondrial-like isoform X1 [Glycine max]
COG	YP_006371119.1	protein GroL [Tistrella mobilis KA081020-065]
Swissprot	tr\|Q93ZM7\|CH60C_ARATH	Chaperonin CPN60-like 2, mitochondrial (Precursor)
trEMBL	tr\|I1KUU0\|I1KUU0_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G20560.1}

Sequence

Transcript Sequence

>Glyur000021s00002750.1
GCGGACGGTGCTCCTTCGCACGGCGTACGACCTCCCTGCGCTGCGCGGTGCGACGACTTCTCCCTTCCTGTGAGATGGCTTCTCCTTTCCGGTGCGACGGCTACTCTTTTCCGGTGCGACGGCACGCCCTCCTCTGGTTGCTCGCCGAACTGAAGGTGGTCTGTGTCTGCTAAGGCCTGCAGAAGTACAGCAAGGGGGAGCGATGTGTTTCAGAAAATTGGGGAAAGCTTTTTGAAAAGGCAGAAGGGTATAATTGTCTGTTTAAGCAAATAAAAAGAGAGAGGTATGTGTTATTAGAAAATCCCAAAATCGGAGCTTAAACCCTCTGTANCTCTAAAGCCCTATTTGGTGCCATTTCTGATCTCACTTCACTTCCTCCGTAGCTAGTAGCTACCTTTGCTTCATTTTCATAGTAAGTTGCTGCGACTGCAATGTATCGATTGGCTTCTAAGTTAGCTTCCTCCTTAGCTTCTTGCACCCCAAAGAATAAGTGCCCCGTATATAGTGGGGCATTGTTAAGCAGAAATTATGTGACGAAAGATATCAACTTTGGGGTTGGGGCTCGTGCTGCTATGCTGCAGGGAGTCTCTGAGGTTGCTGAAGCTGTCAAAGTTACCATGGGACCCAAGGGTCGCAATGTGATAATTGAGAAAAGCCGTGGGATTCCCAGGGTCACGAAGGATGGTGTGACTGTAGCCAAAAGTATCAAATTTAAGGATAAAGCGAAAAATGTTGGTGCCGATCTCATCAAGCAGGTGGCCAAGGCTACCAACACTGCTGCTGGAGATGGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCAAATCAATTGCTGCTGGTGTAAATGTCATGGATTTGCGTAATGGAATAAATAAGGCAGTTGATGCTGNAATTACTGATTTAAAAAGCAGAGCAGTAATGATAAGTACACCAGAAGAGATAACTCAGGTTGGTACTATATCTGCAAATGGGGAGCGTGATATTGGAGAATTGATAGCAAGGGCAATGGAAAAAGTTGGGAAGGAAGGAGTCATTACTGTTTCTGATGGGAATACTTTGGATAACGAGTTGGAAGTGGTAGAAGGAATGAAGTTAACTAGAGGCTACATATCTCCTTATTTTATTACTGATCAGAAGACCCAGAAATGTGAATTGGAGAATCCCTATATCCTCATCCATGACAAGAAAATTTCAGACATGAATTCACTGTTGAAAATATTGGAGCTGACAGTAACGAAAAAAAGACCACTACTAGTTGTTGCGGAAGATGTTGAGAGTGACGCATTGGCTATGCTCATACTCAACAAGCATCATGCTGGGCTTAAGGTTTGTGCTATAAAAGCTCCTGGTTTTGGGGATAATAGAAGAGCAAATCTAGATGATCTTGCAATTCTTACTGGAGGAGAGGTCATCACAGAAGATCGTGGTTTGACTCTTGACAAAGTCCAACCGGAAATGCTTGGCACTGCAAGAAAGATTACTGTCTCCATTGATGACACTATCGTACTACATGGTGGTGGGGATAAGAAGCTCATTGAAGAAAGATGTGAGCAGCTGAGGACAGCTATGGAGAAGAGTTCTGCAATGTTTGATAAAGAAAAGGCACAGGAACGGCTATCAAAACTCTCTGGTGGTGTTGCTGTTTTCAAGGTTGGGGGAGCTAGCGAGGCAGAAGTTGGGGAAAGGAAAGATAGGGTGACAGATGCTGTAAATGCCACTAGAGCAGCTGTGGAGGAGGGTATTGTTCCAGGTGGTGGAGTTGCTCTCTTATATGCTACCAAAGTCTTGGAGAACATTCAAACTAAAAATGAGGATGAGAAAAGAGGAGTACAGATTATTCAGAATGCACTCAAGGCGCCTACGTGTACAATAGCTTCAAATGCTGGTTTTGANGGTGCTTTGGTTCACAGCAAATTGTTGGAACAAGATGATCCTAATTTCGGGTTTGATGCTGCTAAAGGTTCCTATGTTGATATGGTGAAGGCTGGAATTATAGATCCTCTTAAAGTTGTTAGAACAGCTTTGGTAGATGCTGCCAGCGTGTCATTGTTACTGACCACAACCGAGGCAACTGTGGTAGAAAACCCGAATGACAAAAACAAACCTCCCGGGCGGGTGCCAGATATGGATGATTTGGACTACTAAGCTGCTTCACCAAATGATGAAATTGAAAGTAATTTTTGNGTATCAGTTTTCGAGTTTTTCTACCATTCCTGTTTAAGGAAGTTGTTGGTAAAGTATAAGCTCGGGGGGTCTAATTTAAGGAGTGAGGTTGAAATTATGCATTCACAATGTTTTAGGGTAAATTCATGTCTTGACCAAAAAAAAAAGCGTAAATTCATGTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00021	490636	497554	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006457 protein folding

GO:0042026 protein refolding

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000021s00002750.1	PF00118.19	Cpn60_TCP1	55	557	4.10E-115

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.985
SRR1783600	control	6.032
SRR1783602	moderate drought stress	4.628
SRR1811619	moderate drought stress	4.694

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.560
DRR006520	Root Summer glycyrrhizin high producing strain	11.164
DRR006521	Root Winter glycyrrhizin high producing strain	5.088
DRR006522	Root Winter glycyrrhizin high producing strain	4.829
DRR006523	Root Summer glycyrrhizin low producing strain	7.081
DRR006524	Root Summer glycyrrhizin low producing strain	6.939
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.532
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.494

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.787
SRR2868004	Drought Stress (root)	8.265
SRR2967015	Control (root)	9.346

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.636
SRR9715740	Leaf	4.705
SRR9715741	Leaf	5.128
SRR9715739	Root	1.325
SRR9715742	Root	6.059
SRR9715743	Root	4.352

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.195
SRR8749028	MeJA induced 9h	39.336
SRR8749029	MeJA induced 9h	13.232
SRR8749030	Uninduced	7.099
SRR8749031	Uninduced	2.043
SRR8749032	Uninduced	2.824

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.681
SRR8400027	Control - Root	10.462