Gene detail

Gene detail information of Glyur000021s00002748

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23160.1	6.00E-33	cysteine-rich RLK (RECEPTOR-like protein kinase) 8
NR	CAN78448.1	2.81E-80	hypothetical protein VITISV_026811 [Vitis vinifera]
Swissprot	tr\|Q40392\|TMVRN_NICGU	3.00E-33	TMV resistance protein N
trEMBL	tr\|A5AXT6\|A5AXT6_VITVI	1.00E-80	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN78448.1}

Sequence

Transcript Sequence

>Glyur000021s00002748.1
ATGGCTATGGCTTCTGCTTTTACTACTTTTGGTGGGGACGATACTCGTGCCGGATTCACAAGCCATCTCTATGCTGCCTTGTGCCGAAGCTTTGTCCAAACCTATATAGACAATAGGCTGGAGAAAGGGGACGAGGTCTGGGTGGAACTTGTGAAAGCAATCAAAGACTCCAATGTCTTTCTGGTGGTGTTCTCAGAAAACTACGCGTCTTCTACGTGGTGCTTGAACGAACTCGTCGAGATAATGGAGTACCGCAAGAAAAATAAAGAGGATGTTGTTGTTATTCCGGTGTTCTACCGAATAGATCCATCGCACGTGCGGAAGCAGACGGGGAGTTATCACACAGCGTTGGCTAAACACGAGAAGCAACACGACAAGGACAAGTTGCAGAAGTGGAAGGATGCTCTCTCTGAAGCATCCAATTTATCTGGCTTCCATTCTACCAATTTTCGTTTTTCGTTGCTCACTCATGGCGTCTCTGATCACTCCGATCACCACCACCTCACCGGTGACATTCTCACATCCTCTCTGCACCGTTATGCGGTCAATCCTCAAATTCCTCAACAATTCGCGTCTGAATCGGATCGTCTTCTTGGAGACCAGATGTTATTTTCGTGGTTGCTTTTGTCTATGTCCGAATCGTTCTTGCCTCGAGTCCTAGGATGCAAGCACACCTGGGAGGTTTGGGACAAGCCTCAATTGGAGTATGGGCCTTTTATTATGATGATCTATAGTAGAGTCGATAATCCTAAGGCACAATTAGAAAAGTTTAAATCAGACCTTAGCACTGGTACTGTGTCTGTAAATGTTGCACAAGGTCCAAATCAAGTTAATTCGGGTGGATCTAACAATTCTGATCACTCTAATAAGGACTTGAATGAAACTGGTAATGGTAGAGGTCGAGGATCTTGGAGAGGTAGAGGTGGTAGGAACAATAACAACAGTGGTAGAGGTCGAGGAAGCCTGTGCAAGGGACCTAGATCAGGTTCCTTCTCCGGACAACAGCCAAGAGCTTATGTAGCTACACAGAACAGTCAATATCAAGGTAATACTCAGGAAGTCCATATGGGAAATGGTCAAGGTTTGCCAATTAGCTCTATTGGTTCCACACACTTTGTCTCACCACTTCACCCACACATCACTCTATCCTTGAATAACTTGCTGCATGTTCCAACCATCACAAAGAACTTGATGATGGATTGTATTGCTTCCAACAGTTGCGGATGCCAGTCAAGCCTAGAAGACTTAGAGGAATTCTGTGATGCGTGTTGTTTGGGTAAAGCTCACAGGATTCATGCTCCTCCATCTGAAACAGTTTACAGCAAACCTTTTGAGTTGGTCTTTAGTGATTTGTGGGCTGTTCCTAGCCCTTCACCAATTACCTCCACAAATAACCATGATTTGTCCCATTCCTCACCATTCTCCCCACCTGTTACTTCTATGCCTTCTGAAAATACTTCCTCACAAACTGAAAACATGCCCTCACCCACTCAGACTGCGACTGAAACTGGAACCAGTAACACTATTGAAACACCACCTATTCCTCCCTTACCAACTAATGCCCACCCTATGGTTACAAGATCCAAAACCGGTAACCTGAAACCTAAGGTTCTTTTGTCCCATGTTGAGCCTGCTACAGTCAAGCAAGCACTTTCTCAACCTGAATGGCTTAATGCTATGAAGGCAGAATATGATGCATTGATGAAGAATGGTACATGGTCTCTTGTCCACCTTCCTCCTAACAGACAAAACTATAGGTTGCAGATGGTGGTTAAACCAGTAACCATTCGGGTTATTCTTACCCTGGCACTCACTTATGGATGGACATTACAGCAGATTGATGTCAATAACGCATTTCTCAATGGCCTTCTTGATGAAGAAATATACATGGTTCAACCACTAGGTTTTGTCTCCTCTGATAAGAATTTGTTTGGGTTCACTTCTAGTAAATGTGACCCTTCGCTTTTTACCTTGTCAAGAGGCTCAACTCAGGCCAAGTACATCATGGAATTGCTAGCTAAGGCTTCTATGATGGACTCTAATCCTATTAACACTCCAATGGCACCCTTGACTATGAGATCAGCAGCAAATCCTTCTTCTGCATTCTCCTTAATTGCTTTTAGTGATGCTGACTGGGGTAGTGACCCGGATGACCGCAGGTCCACCTCTGGCTATTGCCTATACTTTGGACCAAATCTCATATCTTGGAGCTCGAAGAAACAAGCATTGGTTGCTAGATCAACTGCAGAGGCTGAGTATAGAAGCATGGCACATGCCACAGCTGAGCTTATTTGGGTTCAGTCATTGTTACAAGAACTCAAAATTCCTTTTACTAAGCCTGTTTTGTACTGTGACAACAGCAGTGCCATTGCCCTTTCCCACAACCCTGTACTGCATGCTCGTACCAAACACATGGAATTAGACATCCATTTTGTCCGAGAAAAGGTGGTTTCTCAAGCCCTACTTGTTGAACATGTGCTTGCAGCTCAACAGATTGCTGATGCTCTCACAAAGCCACTTTCTTCTTCTCAATTTGCCTTGATAAGGAGCAAACTCAATGTGTGTCCTTGCAGTCCACCCACTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00021	477200	484343	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000021s00002748.1	PF01582.15	TIR	6	137	3.00E-33
Glyur000021s00002748.1	PF07727.9	RVT_2	589	641	1.90E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.628
SRR1783600	control	1.812
SRR1783602	moderate drought stress	1.722
SRR1811619	moderate drought stress	1.561

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.849
DRR006520	Root Summer glycyrrhizin high producing strain	5.627
DRR006521	Root Winter glycyrrhizin high producing strain	0.066
DRR006522	Root Winter glycyrrhizin high producing strain	0.042
DRR006523	Root Summer glycyrrhizin low producing strain	11.498
DRR006524	Root Summer glycyrrhizin low producing strain	12.395
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.156
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.214

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.672
SRR2868004	Drought Stress (root)	5.053
SRR2967015	Control (root)	5.150

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.779
SRR9715740	Leaf	0.467
SRR9715741	Leaf	1.656
SRR9715739	Root	14.547
SRR9715742	Root	2.083
SRR9715743	Root	4.221

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.012
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.918
SRR8400027	Control - Root	5.946