Gene detail information of Glyur000021s00002746 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G17620.1 | 2.00E-20 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | AFK36335.1 | 6.24E-92 | unknown [Medicago truncatula] |
| trEMBL | tr|I3S7U3|I3S7U3_MEDTR | 2.00E-92 | Uncharacterized protein {ECO:0000313|EMBL:AFK36335.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00021 | 466037 | 466741 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000021s00002746.1 | PF03168.8 | LEA_2 | 107 | 190 | 9.70E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.920 |
| SRR1783600 | control | 29.853 |
| SRR1783602 | moderate drought stress | 24.219 |
| SRR1811619 | moderate drought stress | 23.774 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.568 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.525 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.838 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.535 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.499 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 36.126 |
| SRR2868004 | Drought Stress (root) | 42.444 |
| SRR2967015 | Control (root) | 36.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.850 |
| SRR9715740 | Leaf | 1.005 |
| SRR9715741 | Leaf | 0.897 |
| SRR9715739 | Root | 21.100 |
| SRR9715742 | Root | 61.523 |
| SRR9715743 | Root | 54.420 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.003 |
| SRR8749029 | MeJA induced 9h | 0.028 |
| SRR8749030 | Uninduced | 0.015 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 79.087 |
| SRR8400027 | Control - Root | 123.220 |