Gene detail

Gene detail information of Glyur000021s00002742.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72970.1	0	Glucose-methanol-choline (GMC) oxidoreductase family protein
NR	XP_004509975.1	0	PREDICTED: probable disease resistance protein At4g27220-like isoform X1 [Cicer arietinum]
COG	YP_007093192.1	7.00E-37	glucose-methanol-choline oxidoreductase [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q9S746\|HTH_ARATH	0	Protein HOTHEAD (Precursor)
trEMBL	tr\|A0A067XTH1\|A0A067XTH1_CICAR	0	CC-NBS-LRR disease resistance protein {ECO:0000313\|EMBL:AGT75405.1}

Sequence

Transcript Sequence

>Glyur000021s00002742.1
ATGGCATCTGGGTTCTGCCTGAGTTTCTGGCAAGTTGCTATTTTGTCAAGAGAAGAGACTGAAATTGGAGCAGCAAAATTGATTGCAGGTAAGCAGAAGTGGCATGAAGACCACCAGTACCCCTTCATAAAAAAGGCAAGCTCATTCTCATCACCATCAATTTCAACTACCTCCCTTAACAAGGCCTATGACTACATAATAGTGGGAGGTGGCACTGCAGGGTGTCCTCTGGCTGCAACACTCTCTCAGAACTTCAGTGTTTTGCTACTTGAAAGAGGGGGTGTTCCTTTCACTAACCCCAATGTTACATTTCTTGAGAACTTCCACATNACCTTGGCAGACACTTCACCAACTTCAGCTTCCCAATACTTCATTTCAACAGATGGGGTTTTCAATGCAAGGGCAAGAGTTTTGGGTGGTGGAAGCTCTATCAATGCTGGCTTCTATACTAGAGCAAGCCAGAGGTTTGTAGAAAAGGCAGGGTGGGATGCCAAGCTAGTGAATGAGTCATACCCATGGGTTGAGAAGCAAATTGTTCACCGTCCAAAGTTTTCAGCTTATCAGAGAGCAGTGAGGGAGAGCCTTGTAGATTCTGGGGTCTCTCCTTTTAATGGCTTCACCTATGATCACATCTATGGAACCAAAGTTGGGGGAACCATCTTTGACAGATTTGGCCGCCGCNACACATCTGCTGAACTGCTTGCTTCTGGGAACCCTGACAAACTCACTGTTCTGGTCCATGCCACTGTCCAAAAGATTGTTTTTGATACAACAGGAAAAAGATCAAAAGCTGTGGGGGTTATTTTCAAGGATGAAAATGGGAAACAGCATGAGGCAGTTCTGGGAAATGATATGCATAGTGAAGTGATAGTGTCTAGTGGGGCAATTGGGACTCCTCAATTGCTATTGCTTAGTGGAATTGGGCCAAAAGCTGAACTCAAGAACCTGAACATCTCAGTGGTCCTTGACAACCCATTTGTTGGGAAGGGAATGATAGATAATCCCATGAACACAATTTTTGTTCCTTCCAATAGGCCAGTTGTTCAGTCACTCATACAAACCGTGGGCATCACCAAGTTGGGTGTGTACATTGAGGCTAGCAGTGGGTTTAGTCAGTCCAACGATAGCATTCACTGCCACCATGGTATCTTGTCAGCTGAGATTGGGCAGCTCTCCACAATTCCTCCCAAGCAAAGATCAATAGAAGCTGTAAAAGCTTATGTCAAGAACAAGCGAGACGTGCCGGTTGAAGCATTCAAGGGAGGCTTCATCTTGTCAAAAGTTGCCAGTGCTTGGTCAGTAGGTGAGCTCAGGTTGGTGAACACCAATGTGGATGACAACCCTGCTGTCACCTTCAACTACTTCAGCCATCCATATGATCTTCAGCGCTGTGTCGAGGGGATTCGCTTGTCAACTAAGGTGGTCCAGTCACAACACTTCACAAACTACACTTTGTGTAACAGAGAAACCACAGAGAAACTGCTTAACCTCTCTGTGAAGGCTAATGTCAACTTCATACCCAAGCATGCCAATGACACCAAGTCCCTAGAACAGTTCTGCAGAGACACTGTAATCACAATTTGGCACTACCATGGTGGGTGCCATGTGGGGAAGGTGGTTAGCCCTGANTATAAGGTTCTTGGCATTGACAGACTCCGCGTTGTAGATGGCTCAACATTTACTGAATCACCAGGAACAAATCCTCAAGCCACTGTGATGATGATGGGCAGGTACATGGGAGTGAAGATTTTGAGAGATAGGTTGGGGAGATTGGCTGGTAATCACATTGTATCCGAAGTACAAGCGCAAGTATCCATCCCAGCATCCGTGATTCCCGATCAACAGTGCGTCTGCTTCTTCAAAAGCTCAAAAGGAGACAAGGTTGCCTTTGATTTGATGGCAGATGTTGTTATCTCCATTGTGGCTAAAGTTGCCGAATATTTGGTGACACCAGTAATACGCGAAGGGCGATACTTTCTTTGTTTTAGTAAAATAAAGAAAGATCTTGAGAATGAAAAGGAGCAGCTGACATTTGAAAGTGATAGCTTGCAAGATCGAGTTCAAAAGGCCAATGAGAGAACTGAAGTAATTGAGAAACCTGTGGAAAAATGGCTGAATGATGTGAAAAATCTATTGGAAGAGGTGGCAGGTCTGGAACAAAGGATGGGAGAAAACAACAATTGTTCTCAAGGATGGTGTCCAACATGGAGAAGATATCGTTTATGCAAGCAAGTGGTGAAGAAGATAGAGGCAATGGGGAAATTCAAAGGCAAAAGCAATATTCANCCATTTTCTTACTGTGTTCAACTCCCAGGCATTCAGTACAAGTCATCCAAGAATTTTACCTTTTTTGAGTCAACAAAAGTGGTTTATGATCAACTCTTGGAGTCACTCCAAGATGACTGCATATATATGATAGGAGTGTATGGGATGGGTGGATCTGGGAAAACAACTCTTGTGACAGAAGTGGGTAAGAACGCAGAGGAGCTGAATTTATTTGATATGGTTATATCAATTACAATATCTCAAACTCCAAACATCAGAAATATTCAAGGAAAGATTGCAGATATGTTAGGATTGAAGCTGAAGGAAGAATCTGAGGAGGGAAGAGCACAACGTTTATGGCTGAGTTTGAAAGATAAGAAGCATATCCTTATAATAGTAGATGATCTATGGGGAGAGTTTAATTTGGAGAATATAGGGATCTGCCTTGACAATGATTGCAAGGGTAGATGGAAGGTTATTGTAACTACACGTCGTCAAGAAATATGTAATTTAATGGACTGTCAAAAGAAGATTCATCNAGGTCTGTTATCTACATATGAATCTTGGACTTTGTTCGAAAAGCATGCAAATATTGACCATGCCTTCTCTAAGTCGTTGAATGATGTACCATGGGAGCTTTGTAAGGAATGTAATGGCCTACCCATAGCAATCGTAGCCATTGCATCTTCCTTNANAGGAAAATCTAAAGTTGAGTGGGAGGTGGCATTGCACAACTTGAGGCATTCNGGGACTACTGATGATCATGTGGAGGAAGGAGTGGGAGCTGCCATGAGTTGTCTCAAGCTAAGCTATGATTATTTNAAAAACAAAGATGCAAAGTTGCTCTTCTTGATGTGCTCTATGTTTCCNGAAGACCATCTCATCTCAACTGAAGTTTTGATCCGATGTGCAGTTGGACTGGGTCTGGGAGGAAGGTTTTCATTAGAGTCAGCAAGGAGTCGGATGGTAGCAGGCATAAACAAACTTTTAGATTCTTGTTTATTGATGCACNGTAAGAAAAGAAGGGAAAACTATGTGAAGATGCATGACATTGTACGTGATGTAGCCTTATGGATAGCGAAAAGATCAGAGGATCACAAAATTTTGGTAAATCTTGACANACCACTCATCACTTTGGAAGAGGATGATGATACGAGAGATTATTTTGCTGTATCCTCATGGTATGTAGAAAATCAAATCTCTATTCAATTGGATGCTCCAAACCTTGAGATTCTATTGCTAAATACCGGGAGTCAGGATTTGCTCGATTCATCACATGCAAACTTTGAAGGAATAGAAGGGCTCAAGGTTTTCTATTTAGCCAACAATTACTTTCCTCTGTCAACATTATCATTGCCTCTATCATTCCTATCGTTGACAAATCTTAAAACTCTGCGCTTGACCAAATGGCATTTGGGTGACATTTCTTTCATAGCAAGCTTAACAAGACTTGAGGTTCTTGACTTGGAAGGATGTTACTTCAATGAACTTCCTAGTGAAATGGGAAAACTTAAAAGATTGAAGCTACTAGATTTGTCAAATTGTTGTATTCATCAAAACTATAATGGAGCAATTGGGAAATTTTTACAACTTGAGGAATTCTATGCATCAGAACTCCAAACATTCAGGCACATTCCTCAGATNCTTGTGGATATTGGTACTCTCCCAAAGCTACAGAGGTTTGTAATATATGGAACCAGTAGCATGTTCCTATATTATGCAACGTTGAGATACAGAACCGCAGAAGGGAGAAGAGTTTTTGAACTATATGATATCNATATCTCTGACTTGAATGCAGCTGAAAAGAATCTTCTGCAAAAAGCTGACNTTACTCGTTTGACACGCATTCATGGAGGATGTAAAAATTTCATCCCAGATTTAATTGGAGCTGTGGGGGGCATGAACTATTTGACTGATCTCCGTCTTGTCGAATGTGCAGAGATAGAATGCTTCTTCCATGACACCTCTCATACAGAGGTNGATGCTTTGATTCCCAGGTTGGTCGAGTTATGGCTGTCAAATTTGGAAAACTTGAAAGAATTATGTCAAGGTCCACCCCTGCGTGCGCCACGCTTCTTTGAGACTTTAGAAAAACTCTTTATATTTGATTGCTACCAGTTGCACAACATATTCCCACGGGAATGTAGATTGCNAAATCTTAAGATCCTGACAATAGAGAACCAGTATCCCAAGGATTGCAAGTTAGAAGTACTCTTCTCAATGTCTGTTGCTAGAAGTCTACAGCAGCTAGAAAAGTTGATTCTACGATGTTGCACGGAATTGAAGCAGATAATTGCAAGTGAAAGAGAGCATGGTTCTAATGCAAGCCAAGAAATAGTTACATCTCCAAGGAATTCTCATTTTGTGATGCCCAATCTGAAGGAAGTTGACATTCATGACTGTTGGAAGTTAGAGTGTATATTCCCAATCTGTTGTCTTGAAGGATTTGCACAACTGCAATCGATAAAAATAAGCATGGCGCCGGATCTGAAATATGTGTTTGGTGAATGTGACCANGAAGATAATTCATCTCTCCAATACGAGAACCAGAACGTGTTTCCTGATTTGGAAGTTCTCCTACACGGTAATCTTGATAATCTCGTTGGGATATNTCCTGAAAACTATCACGCAAAGTGGCCATCTCTAGGGAAGCTAACTGTGAAGGATTATCCAGAATACACTAGATCATGGAATTATGGTGGCTGANTCCATGTGGTAGATGGCTCAACGTTTACTGAATCACCAGGAACAAATCCTCAAGCTGCTGTGATGATGATGGGCAGGTACATGGGGGTGAAGATTTTGAGAGATAGGTTGGAGAAATTGGCTGGAGCTCAGGAAATACATGATACACCTCAAGTTTCTATACTTCAATGA

Protein Sequence

>Glyur000021s00002742.1
MASGFCLSFWQVAILSREETEIGAAKLIAGKQKWHEDHQYPFIKKASSFSSPSISTTSLNKAYDYIIVGGGTAGCPLAATLSQNFSVLLLERGGVPFTNPNVTFLENFHXTLADTSPTSASQYFISTDGVFNARARVLGGGSSINAGFYTRASQRFVEKAGWDAKLVNESYPWVEKQIVHRPKFSAYQRAVRESLVDSGVSPFNGFTYDHIYGTKVGGTIFDRFGRRXTSAELLASGNPDKLTVLVHATVQKIVFDTTGKRSKAVGVIFKDENGKQHEAVLGNDMHSEVIVSSGAIGTPQLLLLSGIGPKAELKNLNISVVLDNPFVGKGMIDNPMNTIFVPSNRPVVQSLIQTVGITKLGVYIEASSGFSQSNDSIHCHHGILSAEIGQLSTIPPKQRSIEAVKAYVKNKRDVPVEAFKGGFILSKVASAWSVGELRLVNTNVDDNPAVTFNYFSHPYDLQRCVEGIRLSTKVVQSQHFTNYTLCNRETTEKLLNLSVKANVNFIPKHANDTKSLEQFCRDTVITIWHYHGGCHVGKVVSPXYKVLGIDRLRVVDGSTFTESPGTNPQATVMMMGRYMGVKILRDRLGRLAGNHIVSEVQAQVSIPASVIPDQQCVCFFKSSKGDKVAFDLMADVVISIVAKVAEYLVTPVIREGRYFLCFSKIKKDLENEKEQLTFESDSLQDRVQKANERTEVIEKPVEKWLNDVKNLLEEVAGLEQRMGENNNCSQGWCPTWRRYRLCKQVVKKIEAMGKFKGKSNIXPFSYCVQLPGIQYKSSKNFTFFESTKVVYDQLLESLQDDCIYMIGVYGMGGSGKTTLVTEVGKNAEELNLFDMVISITISQTPNIRNIQGKIADMLGLKLKEESEEGRAQRLWLSLKDKKHILIIVDDLWGEFNLENIGICLDNDCKGRWKVIVTTRRQEICNLMDCQKKIHXGLLSTYESWTLFEKHANIDHAFSKSLNDVPWELCKECNGLPIAIVAIASSXXGKSKVEWEVALHNLRHSGTTDDHVEEGVGAAMSCLKLSYDYXKNKDAKLLFLMCSMFPEDHLISTEVLIRCAVGLGLGGRFSLESARSRMVAGINKLLDSCLLMHXKKRRENYVKMHDIVRDVALWIAKRSEDHKILVNLDXPLITLEEDDDTRDYFAVSSWYVENQISIQLDAPNLEILLLNTGSQDLLDSSHANFEGIEGLKVFYLANNYFPLSTLSLPLSFLSLTNLKTLRLTKWHLGDISFIASLTRLEVLDLEGCYFNELPSEMGKLKRLKLLDLSNCCIHQNYNGAIGKFLQLEEFYASELQTFRHIPQXLVDIGTLPKLQRFVIYGTSSMFLYYATLRYRTAEGRRVFELYDIXISDLNAAEKNLLQKADXTRLTRIHGGCKNFIPDLIGAVGGMNYLTDLRLVECAEIECFFHDTSHTEVDALIPRLVELWLSNLENLKELCQGPPLRAPRFFETLEKLFIFDCYQLHNIFPRECRLXNLKILTIENQYPKDCKLEVLFSMSVARSLQQLEKLILRCCTELKQIIASEREHGSNASQEIVTSPRNSHFVMPNLKEVDIHDCWKLECIFPICCLEGFAQLQSIKISMAPDLKYVFGECDXEDNSSLQYENQNVFPDLEVLLHGNLDNLVGIXPENYHAKWPSLGKLTVKDYPEYTRSWNYGG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00021	438120	452501	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15403	ACE, HTH	EC:1.1.-.-	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0043531 ADP binding

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000021s00002742.1	PF00732.14	GMC_oxred_N	63	335	6.90E-31
Glyur000021s00002742.1	PF05199.8	GMC_oxred_C	433	577	9.70E-28
Glyur000021s00002742.1	PF00931.17	NB-ARC	791	1058	9.70E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.787
SRR1783600	control	0.748
SRR1783602	moderate drought stress	1.034
SRR1811619	moderate drought stress	1.059

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.488
DRR006520	Root Summer glycyrrhizin high producing strain	0.521
DRR006521	Root Winter glycyrrhizin high producing strain	0.093
DRR006522	Root Winter glycyrrhizin high producing strain	0.047
DRR006523	Root Summer glycyrrhizin low producing strain	0.346
DRR006524	Root Summer glycyrrhizin low producing strain	0.322
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.664
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.629

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.873
SRR2868004	Drought Stress (root)	6.162
SRR2967015	Control (root)	5.456

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.788
SRR9715740	Leaf	0.654
SRR9715741	Leaf	0.694
SRR9715739	Root	0.087
SRR9715742	Root	0.604
SRR9715743	Root	0.662

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.250
SRR8749028	MeJA induced 9h	1.592
SRR8749029	MeJA induced 9h	0.194
SRR8749030	Uninduced	1.192
SRR8749031	Uninduced	0.464
SRR8749032	Uninduced	0.180

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.386
SRR8400027	Control - Root	3.477