Gene detail information of Glyur000021s00002731.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G13730.1 | 2.00E-176 | cytochrome P450, family 90, subfamily D, polypeptide 1 |
| NR | KEH18338.1 | 0 | cytochrome P450 family 90 protein [Medicago truncatula] |
| COG | YP_001519436.1 | 2.00E-56 | cytochrome P450 family protein [Acaryochloris marina MBIC11017] |
| Swissprot | tr|Q94IA6|C90D1_ARATH | 0 | 3-epi-6-deoxocathasterone 23-monooxygenase |
| trEMBL | tr|A0A072TNC8|A0A072TNC8_MEDTR | 0 | Cytochrome P450 family 90 protein {ECO:0000313|EMBL:KEH18338.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00021 | 362793 | 367048 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Cytochrome P450 Family | CYP90D1 |
| Cytochrome P450 Family | CYP90C1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12638 | CYP90D1 | EC:1.14.13.112 | Brassinosteroid biosynthesis | map00905 |
| Brassinosteroid biosynthesis | map00905 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000021s00002731.2 | PF00067.17 | p450 | 37 | 163 | 8.90E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.065 |
| SRR1783600 | control | 16.713 |
| SRR1783602 | moderate drought stress | 15.941 |
| SRR1811619 | moderate drought stress | 15.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.770 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.793 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.517 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.512 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.437 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.913 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.043 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.227 |
| SRR2868004 | Drought Stress (root) | 3.512 |
| SRR2967015 | Control (root) | 4.382 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.031 |
| SRR9715740 | Leaf | 0.059 |
| SRR9715741 | Leaf | 0.014 |
| SRR9715739 | Root | 2.924 |
| SRR9715742 | Root | 6.959 |
| SRR9715743 | Root | 5.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.066 |
| SRR8749028 | MeJA induced 9h | 0.032 |
| SRR8749029 | MeJA induced 9h | 0.084 |
| SRR8749030 | Uninduced | 0.120 |
| SRR8749031 | Uninduced | 0.004 |
| SRR8749032 | Uninduced | 0.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.542 |
| SRR8400027 | Control - Root | 6.280 |