Gene detail

Gene detail information of Glyur000021s00002721

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G21250.2	1.00E-124	multidrug resistance-associated protein 6
NR	AES76690.2	0	ABC transporter-like family-protein [Medicago truncatula]
COG	NP_969385.1	3.00E-66	multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100]
Swissprot	tr\|Q8LGU1\|AB8C_ARATH	5.00E-156	ABC transporter C family member 8 (Precursor)
trEMBL	tr\|M5XC27\|M5XC27_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ19073.1}

Sequence

Transcript Sequence

>Glyur000021s00002721.1
GCTTCATCGGATTTGAGTATTTTGGACTTTGATATACCTTATTCCATCACTTTTGTAGCAGCTGTAGCAATTGAAATTTTGGTGATAATTTGTATAATGGCTTCAGTCACATGGCAAGTTCTCATTGTTGCNGTTCCCACAATGGTAGCATCAAAATATATACAGGGATATTATATAGCCTCTGCAAGGGAACTAGTAAGGATCAATGGAACCACCAAAGCTCCAGTCATGAACTTTGCAGCGGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTGGACAGGTTTTTCAAAAGCTACTTAAAACTTGTGGACACAGATGCAACACTAATCAAGCAATTCATTCACATAACACCAGAGCCTCCTGCCATTGTGGAGGATAACCGCCCTCCATCTTCATGGCCTTCCAAGGGCAGGATTGATCTTCAAGCCTTAGAGATTAGATATCGTCCTAATGCTCCATTAGTTCTTAAGGGAATCACTTGTACATTTAAAGAAGGGAGTAGGGTGGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTCATTAGTGCTTTGTTTCGCTTAGTGGAGCCTTCAAGAGGTGATGTTATCATTGATGGGATTAACATATGCTCAATCGGGTTGAAGGATTTGAGGATTAAGCTAAGCATCATACCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACAAACCTTGACCCTCTAGGCCTTTATGCAGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTCAAGGAAACAATCAGCAAGCTACCAAGTCTCTTGGACTCTTCCGTGAGTGATGAAGGTGGGAATTGGAGCTTGGGACAGCGCCAACTGTTTTGTCTTGGAAGAGTACTACTCAAGAGGAACAGAATTCTTGTTCTGGATGAAGCAACTGCCTCCATTGACTCAGCCACGGATGCCATTCTACAAAAAGTAATTAGACAAGAATTTGCAGAATGCACAGTTATAACCGTTGCTCACAGAGTTCCAACTGTAATGGACAGTGACATGGTCATGGTCCTATCTTATGGGAAACTGGTGGAATATGACGAGCCTTCAAAGCTAATGGACACCAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGTCCAGCTGCAGGAAGAATTCTTTCCCAAATATTCGCAGGCAGCTACAATGAATAATAACTATATGGCAAAGAGTTAACAATTTAGGAATTCTTGCTATTATTGAGAATTAAGAATATATAGCTTTTACAATTTTTCACTGTCGAAATCATATTTTTGATACGGTGTTGTAATGTATTCTCACATCTATTNTAACCATATCATCATCAAATAAATTTGAGCTTTCGATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00021	276547	279166	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000021s00002721.1	PF00664.18	ABC_membrane	2	108	4.00E-06
Glyur000021s00002721.1	PF00005.22	ABC_tran	160	308	1.30E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.211
SRR1783600	control	14.082
SRR1783602	moderate drought stress	16.552
SRR1811619	moderate drought stress	16.008

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.436
DRR006520	Root Summer glycyrrhizin high producing strain	4.382
DRR006521	Root Winter glycyrrhizin high producing strain	20.354
DRR006522	Root Winter glycyrrhizin high producing strain	19.847
DRR006523	Root Summer glycyrrhizin low producing strain	8.100
DRR006524	Root Summer glycyrrhizin low producing strain	7.540
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.221
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.160

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.368
SRR2868004	Drought Stress (root)	4.085
SRR2967015	Control (root)	4.187

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.437
SRR9715740	Leaf	24.488
SRR9715741	Leaf	27.129
SRR9715739	Root	0.209
SRR9715742	Root	1.920
SRR9715743	Root	2.182

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.567
SRR8749028	MeJA induced 9h	33.331
SRR8749029	MeJA induced 9h	25.456
SRR8749030	Uninduced	60.480
SRR8749031	Uninduced	46.400
SRR8749032	Uninduced	40.671

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.614
SRR8400027	Control - Root	2.114