Gene detail

Gene detail information of Glyur000021s00002713.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G51710.1	ubiquitin-specific protease 6
NR	XP_004510348.1	PREDICTED: ubiquitin carboxyl-terminal hydrolase 6-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q949Y0\|UBP6_ARATH	Ubiquitin carboxyl-terminal hydrolase 6
trEMBL	tr\|A0A072TN68\|A0A072TN68_MEDTR	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}

Sequence

Transcript Sequence

>Glyur000021s00002713.1
AAAGCCCGCAACACCACGTTTCGTTTTGCCCTTTCTTCAAGCCAAGCTCTTCCTTATTTCTCAACTCTTATTTGTTCCTTTCTTCTTCTTCTTCTTCTTCTCCTCCTCACTTCCTTCCTCTCTCGATCCTTCTAGTTCTACCACCAATATGATTACAGTAAGTGTAAAATGGCAAAAGGAGCTTTTCAAAGATGTAGAAATCGATACCAGCCAGCCCCCTTATGTTTTTAAGTGCCAATTATATGATCTGACAGGGGTGCCTCCCGAAAGACAAAAAATTATGGTCAAGGGTGGTCTTTTAAAGGATGATGCTGATTGGTCAACGTTAGGAGTGAAAGAGGGTCAAAAGCTAATGATGATGGGAACAGCTGATGAAATTGTTAAGTCTCCAGAGAAGGGAACTGTTTTTGTTGAAGATCTTCCTGAAGAAGAACAAGTAGTTGCTGTTGGACATACTGCTGGTCTTTTCAATTTGGGAAATACCTGTTATATGAACTCAACATTGCAATGCCTCCATTCTGTGCCGGAGTTGAAGTCTGCTTTGACGAAGTACTCCCATTCAGGACGAAACAATGATGTTGATCAGCCTTCTCATATGTTGACCATTGCAACCCGAGACTTATTCAATGAGCTTGATAAAAGTGTCAAGCCTGTGGCACCNATGCAATTTTGGATGGTATTGCGGAAAAAGTATCCTCAATTTGGCCAGCTGCACAATGGAGTGTTCATGCAACAGGATGCTGAAGAATGTTGGACACAACTTCTTTACACTCTTTCACAGTCTCTCAGATCCCCTGGATCTAGTGAAAATCCTGATCCTGTGAAGGCCATTTTTGGCATAGAACTTAATAGCAGGATTTATTGCCAAGAGAGCAATGAAGAAAGCTCAGAAACAGAATCCGTTTATTCACTTAAATGCCACATATCGCAGGAGGTAAACCATTTGCATGAAGGACTAAAACATGGATTAAAATCAGAGTTGGAAAAGGCTTCCCCTGCTTTGGGCCGTAGTGCTACTTACTTGAAAGAATCACGCATCAATGCCCTGCCAAGGTACTTGACTGTTCAGTTCGTCCGTTTTTTCTGGAAAAGGGAATCAAACCAAAAGGCTAAGATTTTGCGGAAAGTGGATTATCCTCTGGAGTTGGATGTTTATGATCTTTGTTCTGATGATCTTCGTAAAAAATTGGAAGCTCCTAGACAGATCCTAAGAAATGAGGAAGGCAAAAAGCTTGGTCTGAAAGTGAACGAGAAAAGCTCTGTTAGCAAGGAAAATGATGTAAAAATGACCGATGCTGAGGGATCATCAAATGGAGGAGGGGAGCCATCTGTTGCTCCAATGGAGGAAGGAGAAAAGGACACACAAATGACTGGAATTTATGATTTGGTTGCTGTATTGACCCACAAGGGTAGGAGTGCTGATTCAGGACATTATGTTGGTTGGGCCAAGCAAGAAAATGGGAAATGGATAGAGTTTGATGATGACAATCCAAAACCAAGAGTAGAAGAAGACATCACTAGACTATCTGGAGGAGGTGATTGGCATATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTCAGTAATTGCTAAGAAGAGCCCATTTGGTGTTTTACCTCAGATTCCAGGATTGTGAAAAGAATGGTCCACTGGTCATTGTTTGTATTTTACTTTGAGCTTTGAGGCATGTTAGTTAGGCGTTATTTATTCAACTTAGAGATTGTATTTTTTATTTTAAAAAAAAAAAGGTGTATAAGGATTTGGATTGAAGCACGCTCATTATCCTGAATCTCCTNCTTTCACTCGACTGAGCCCATGAGGCAGCTGAATATCAAATTTTATTTATATGATGAAGCCCCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00021	197425	208814	+

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

molecular_function

GO:0005515 protein binding

GO:0036459 thiol-dependent ubiquitinyl hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000021s00002713.1	PF00240.18	ubiquitin	16	72	1.10E-06
Glyur000021s00002713.1	PF00443.24	UCH	103	473	1.10E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	39.933
SRR1783600	control	40.297
SRR1783602	moderate drought stress	36.008
SRR1811619	moderate drought stress	36.261

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	55.300
DRR006520	Root Summer glycyrrhizin high producing strain	54.913
DRR006521	Root Winter glycyrrhizin high producing strain	62.151
DRR006522	Root Winter glycyrrhizin high producing strain	60.082
DRR006523	Root Summer glycyrrhizin low producing strain	53.528
DRR006524	Root Summer glycyrrhizin low producing strain	54.706
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.647
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.858

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	92.846
SRR2868004	Drought Stress (root)	89.747
SRR2967015	Control (root)	77.645

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	51.038
SRR9715740	Leaf	57.554
SRR9715741	Leaf	60.929
SRR9715739	Root	13.461
SRR9715742	Root	43.563
SRR9715743	Root	37.356

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	76.897
SRR8749028	MeJA induced 9h	77.212
SRR8749029	MeJA induced 9h	65.478
SRR8749030	Uninduced	50.077
SRR8749031	Uninduced	49.769
SRR8749032	Uninduced	37.409

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	69.908
SRR8400027	Control - Root	67.320