Gene detail information of Glyur000021s00002706 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29410.2 | 6.00E-58 | Ribosomal L28e protein family |
| NR | KHN11312.1 | 5.69E-93 | 60S ribosomal protein L28-2 [Glycine soja] |
| Swissprot | tr|Q9M0E2|RL282_ARATH | 4.00E-73 | 60S ribosomal protein L28-2 |
| trEMBL | tr|I1KUX8|I1KUX8_SOYBN | 2.00E-93 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G20960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00021 | 147443 | 149589 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000021s00002706.1 | PF01778.12 | Ribosomal_L28e | 8 | 128 | 7.30E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 109.778 |
| SRR1783600 | control | 110.358 |
| SRR1783602 | moderate drought stress | 71.630 |
| SRR1811619 | moderate drought stress | 71.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 138.918 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 138.651 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 62.085 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 60.472 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 138.122 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 138.611 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 62.914 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 62.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 547.400 |
| SRR2868004 | Drought Stress (root) | 325.021 |
| SRR2967015 | Control (root) | 281.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 175.894 |
| SRR9715740 | Leaf | 146.837 |
| SRR9715741 | Leaf | 137.698 |
| SRR9715739 | Root | 76.590 |
| SRR9715742 | Root | 102.470 |
| SRR9715743 | Root | 100.682 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 375.480 |
| SRR8749028 | MeJA induced 9h | 152.202 |
| SRR8749029 | MeJA induced 9h | 231.941 |
| SRR8749030 | Uninduced | 55.753 |
| SRR8749031 | Uninduced | 29.562 |
| SRR8749032 | Uninduced | 48.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 221.469 |
| SRR8400027 | Control - Root | 214.295 |