Gene detail information of Glyur000021s00002702.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G21310.1 | 2.00E-139 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| NR | XP_003529742.1 | 0 | PREDICTED: uncharacterized protein LOC100793448 [Glycine max] |
| trEMBL | tr|I1KGG0|I1KGG0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G01590.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00021 | 122964 | 127060 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000021s00002702.1 | PF02485.16 | Branch | 117 | 344 | 3.00E-84 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.135 |
| SRR1783600 | control | 8.266 |
| SRR1783602 | moderate drought stress | 5.860 |
| SRR1811619 | moderate drought stress | 5.625 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.866 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.936 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.082 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.938 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.584 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.226 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.365 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.987 |
| SRR2868004 | Drought Stress (root) | 6.370 |
| SRR2967015 | Control (root) | 5.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.133 |
| SRR9715740 | Leaf | 4.742 |
| SRR9715741 | Leaf | 3.907 |
| SRR9715739 | Root | 5.219 |
| SRR9715742 | Root | 9.319 |
| SRR9715743 | Root | 7.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.918 |
| SRR8749028 | MeJA induced 9h | 5.114 |
| SRR8749029 | MeJA induced 9h | 4.156 |
| SRR8749030 | Uninduced | 1.526 |
| SRR8749031 | Uninduced | 1.023 |
| SRR8749032 | Uninduced | 1.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.527 |
| SRR8400027 | Control - Root | 9.852 |