Gene detail

Gene detail information of Glyur000021s00002698

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G21330.1	5.00E-52	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NR	XP_003529743.1	0	PREDICTED: transcription factor bHLH87-like isoform X1 [Glycine max]
Swissprot	tr\|Q8S3D2\|BH087_ARATH	8.00E-73	Transcription factor bHLH87
trEMBL	tr\|K7KZ03\|K7KZ03_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G01611.1}

Sequence

Transcript Sequence

>Glyur000021s00002698.1
AAAACCTGATATTAAAACCTGCTTTCAGTCCTCTGTTCTGTTTCTGACATTGAAGACTCAAACAAGGATTCTCATCTGGGTTGGTGTCAGCTGGATCTAGAAGTAGAACTGAACAACTACAATCATCTATGGATGGTCTGAATTGGGATGCCACACCAGTCCTGTGGAGTACTCAGCAGCAACAAGACTTTGAAGGAGGCTACTACCCCATATCCAAATCAAGTTCAAAATATGTTCTTAATCATCAAATACAAGAGATGCAGAAAGCTCAAACAGGCCATACATATTCAAATTCTGAAAGAGTGATTTATCATTCAGCAGTTGCTAGTGCTACCACCAGTTCTTCAGAGATGATAGATGTGATGCCAAACACAAATCTGTCACAGCATGCAGCAGCAACCATGACAGTGAGATCATCAAGAGCTGGATCCAGCTGGGGAGACGCTTTGATATCCCAATCATGCCCATCCCTTTCAGTCAATGAACCTTACAGTACTATTAGATACTACAGGCCAGATTTCAACATGGCCCACCAACAACAACAACAACTCATGATCAATGGCTCACAAAATGGGAAGAAAGGTGCTGCCTGCTCTTCTCTTGAGTCTTTTGATTGCTTGCTTTCAGCTACTAACAGCAGCAACATTACAGACACTACTTCTGTTGTTGAAGATGATGGGTTCTCAATGATTTTATCTGACTGTGGAAACTTGTGGAACTTCACTAGTTATGGCAGTGCATCAGCATCCTCTGGTGGTGAATCTGAGAGTACTAATGCTTCCAATGTCACCAGAAACAACAAAGACATGCAGTGTCATGTCAATGAACTCGATGAAACAGCTTCTCAAAGCTCCTCAGATCAATACTACATCAATCAAGGAAAAGCAAAAGAATCCAAGGCTAATTGCTCAAAGAGGAGTAATGTTCAGAATTCTTCTTCTATGGAAGGTGCAGGTTTCAGGCTTAATATCTCTGATAAACCAGCAAAGTGCAAGAAACCCAGATGGGAAAAGGGTCCTTGTTCATCTAACATCAATTTCCGGCAACCAAACTCAACATCAATGTGTTCTTCTTCCATCATTGAGGAGCCTGATCCAGAGGCCATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCTGTGAACTTTGGCATGGATGAGGTGGTTGAAAGGCCTAAGAGGAAGAATGTGAGGATATCAAGTGATCCACAAACAGTGGCTGCAAGGCATAGGAGGGAGAGAATAAGTGAGAGGATTAGGGCTTTACAGAACCTTGTCCCTGGGGGAAGCAAGATGGACACTGCATCAATGCTTGATGAGGCTGCTAACTACCTCAAGTTCCTCAGATCACAGGTTAAGGCACTGGAAAGTTTAGGGAACAAGGTTGATGCAATGGATTGTCCTCCTACTAGCATTGCCTTCTCTTTTAACCCTTCTTTTCCCATGCAAATCCCTAGCCACAATATCCATCATTCCCAGGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00021	106959	108643	-

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000021s00002698.1	PF00010.21	HLH	369	409	5.50E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.101
SRR1783600	control	0.120
SRR1783602	moderate drought stress	0.312
SRR1811619	moderate drought stress	0.391

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.067
DRR006520	Root Summer glycyrrhizin high producing strain	1.208
DRR006521	Root Winter glycyrrhizin high producing strain	1.045
DRR006522	Root Winter glycyrrhizin high producing strain	1.019
DRR006523	Root Summer glycyrrhizin low producing strain	5.041
DRR006524	Root Summer glycyrrhizin low producing strain	5.064
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.081
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.021

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.266
SRR2868004	Drought Stress (root)	1.858
SRR2967015	Control (root)	2.568

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.077
SRR9715740	Leaf	3.664
SRR9715741	Leaf	5.697
SRR9715739	Root	1.939
SRR9715742	Root	3.741
SRR9715743	Root	3.096

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.624
SRR8749028	MeJA induced 9h	3.290
SRR8749029	MeJA induced 9h	3.340
SRR8749030	Uninduced	3.797
SRR8749031	Uninduced	3.022
SRR8749032	Uninduced	1.953

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.587
SRR8400027	Control - Root	0.892