Gene detail

Gene detail information of Glyur000021s00002693

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26680.2	3.00E-176	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_003625044.1	0	Pentatricopeptide repeat-containing protein [Medicago truncatula]
Swissprot	tr\|Q9SZ10\|PP338_ARATH	0	Pentatricopeptide repeat-containing protein At4g26680, mitochondrial (Precursor)
trEMBL	tr\|G7KRP3\|G7KRP3_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:AES81262.1}

Sequence

Transcript Sequence

>Glyur000021s00002693.1
ATGAGAAGAGACATTGGGTGGTTTCATCAATTTTCGACTCTGATAGAACCCCACCTCAAAAAACCAACAAGTACGAGGAGGTTTCTACCCATACCCCATCGAACGATTCCCGAACCAAAGGGACAGGATCTGGATTTCGTGAACGTGGCACACAGCCACCTCATCCACTCCCACTGGGAAAACCTCAACCCACTCTCACCCTCCCTCACCCCATTCAGAGTCAAACACATCCTCCTCAAGCTCCGAAACGACGCCGTCCTCTCCCTCGAGTTCTTCAACTGGGTCCACACCCACAACCCTTCTTCTCACACCCTCGATACCCACTCCTTCCTCCTCCACACTCTCGCTAAAAACCGCAACTTCAAAACCACCCAATCAATCCTCCGCAGAATCCTCGCCACCACCACCGTCGATTTCCCTCACAAGCTCTTCGATGCATTGCTCCACTCTTACATTCTCTGCGATTCCTCGCCCCTTGTTTTCGACGCTCTTTTCAAGACCTATGCTCACATGAACAAGCTCAGAAACGCCACCGACACTTTCCTTCAAATGAAGGAATATGGGTTCTTCCCAACCGTTGAGTCATGCAACGCGTTTCTCAGTACACTGCTTCGCCTTCAAAGACCAAAAGTGGCTTTGTCATTCTATCAACAAATGCGTCGTGATTCTATTCCCCACAATGTTTACACTCTCAANATGGTTATTTCTGCTTACTGTAAGCTGGGGGAACTACAAAAGGCCTCTGAGGTTTTGGAGAAGATGAGGGACATGGGTTTGAGCCCCAATGTTGTGTCTTTTAATGCATTGATTTCTGGGTATTGTGACAAGGGTTTACTTGGTTTGGCATTAAAGGTTAAATCTTTGATGATGGGNAAAAGTGGGGTGTTCCCAAATGTGGTTACTTTTAACACGCTTATTAATGGGTTTTGTAAGGTGGGGAAGCNGCAGGAAGCGTATAGGGTTTTCAGTGAGATGAAGGTGGCTAATGTGGCTCCTAATACTGTGACATACAACACTTTGATCAATGGGTATGGTCAGGTTGGTGACACTGAGATGGGGATTGGGCTTTTTGAGGAGATGGGGAGAAATCAGGTCAAGGCTGATATTTTGACTTATAATGCATTGATTTTGGGACTGTGTAAGGATGGGAAGACAAAAAAAGCTGCGTATGTGGTTAAGGAGCTTGTTGATAAGGAGAAGTTGGCACCCAATGCGTCTACCTTTTCTGCTCTCATCACTGGGCAGTGTGTGAGGAACAACGCTGAGCGTGCCTTTCTTGTTTATAGGACCATGATAAGGAGTGGTTATAGTCCAAATGAGAATACTTTCCACATGTTGATATCTGCATTCTGCATGAATGAGGACTTTGATGGAGCAGTTCAGGTCTTAAGGGACATGTTGGACAGATTTATGACCCCGGATTCCAGTGTCTTATCTGANGTGTATAGTGGACTTTGCAGGTGCGGGAGAAAACAGTTGGCATTGATGCTGTGTAGTGAGATGGAAGCTAGGCGTCTATTGCCAGAAGGTTTTGACACAGAAAAATTAGCCAACACTCGTCCAGAAAATGAGACAAATAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00021	80396	81979	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000021s00002693.1	PF13041.1	PPR_2	233	275	2.80E-12
Glyur000021s00002693.1	PF13041.1	PPR_2	297	344	1.40E-20
Glyur000021s00002693.1	PF12854.2	PPR_1	365	394	3.00E-06
Glyur000021s00002693.1	PF13041.1	PPR_2	403	451	3.70E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.548
SRR1783600	control	2.464
SRR1783602	moderate drought stress	3.797
SRR1811619	moderate drought stress	3.964

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.215
DRR006520	Root Summer glycyrrhizin high producing strain	4.768
DRR006521	Root Winter glycyrrhizin high producing strain	5.311
DRR006522	Root Winter glycyrrhizin high producing strain	4.846
DRR006523	Root Summer glycyrrhizin low producing strain	6.822
DRR006524	Root Summer glycyrrhizin low producing strain	6.658
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.218
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.121

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.842
SRR2868004	Drought Stress (root)	2.594
SRR2967015	Control (root)	1.685

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.468
SRR9715740	Leaf	1.807
SRR9715741	Leaf	2.281
SRR9715739	Root	1.868
SRR9715742	Root	1.269
SRR9715743	Root	1.135

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.036
SRR8749028	MeJA induced 9h	2.250
SRR8749029	MeJA induced 9h	0.645
SRR8749030	Uninduced	0.947
SRR8749031	Uninduced	0.194
SRR8749032	Uninduced	0.323

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.512
SRR8400027	Control - Root	1.223