Gene detail

Gene detail information of Glyur000021s00002691.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G21350.1	4.00E-75	RNA polymerase transcriptional regulation mediator-related
NR	XP_003531638.1	3.35E-147	PREDICTED: mediator of RNA polymerase II transcription subunit 6-like isoform X1 [Glycine max]
Swissprot	tr\|F4IXJ7\|MED6_ARATH	8.00E-95	Mediator of RNA polymerase II transcription subunit 6
trEMBL	tr\|U5U2M8\|U5U2M8_PHAVU	1.00E-146	Mediator of RNA polymerase II transcription subunit 6 {ECO:0000313\|EMBL:AGZ15418.1}

Sequence

Transcript Sequence

>Glyur000021s00002691.1
CTTGCCAAAAGGTCTATAGGTTACAATTCATTATGATGCAGTACCGTTGTGAATGAAATGGGCCTTGCTAGTAAATTGAGAGTTTTGGATAGAAGTAAAATTTGGGTTGTGCTGTGAATCCATTTTTAGTTAATCATTTCCTAGGCTAGAGAGTGCAAGTGTACCCGTCCGTACGGTCAAGTTGGGAGTTGGAGATGGCGACACCGGGTCCGGGAGGAGAGGGNGGAGCGGTACAACCGCCGGGGACGGACATGACCGGAATATGCTTCAGAGATCAGCTGTGGCTTAACACCTANCCTCTGGATCGCAACCTCGTCTTCGATTACTTCGCACTCTCCCCTTTTTATGATTGGACCTCCAACAACGAGCAACTCCGAATGCGCTCTGTCCACCCTCTNGATCCCTCTCAACTCTCCAAAATGACGGGCACNGAGTATGTGCTGAGTGAAGTGATGGAGCCTCACCTTTTCGTCATTCGCAAGCAGAAGAGNGATAGCCCCGATAAAGTTACCCCAATGCTTGCCTATTACATCCTCGATGGCTCCATCTACCAGGCTCCTCAACTCTGCAATGTCTTTGCTGCTCGAATTGGAAGGGCACTCTATTATATTCAAAAGGCCTTCACTACGGCTGCCTCTAAGTTGGAGAAGATAGGATACGCTGGATCAGTTGATTCGGAAAATGAGACTGCATTGCTGGAACCAAAGGTCGGTAAGGAGGCAATTGACGTGAAGGAAGTTAAGCGAGTGGATCATATTCTTGCATCCTTGCAACGCAAGCTACCACCAGCTCCACCTCCACCACCATTTCCAGAAGGGTATGTTCCACCTCCAACAGCAGAAACTGAAAAAAGCACTGAAACTCAGGAAGCAGCAGCTGAGTCACAAGCTCCTGCTGTTGATCCCATAATTGATCAAGGACCTGCGAAAAGAATGAAATTTTGATATAAAAGACAAACAGCAATAGCTATCAATATCAAATTACAGGAAAAGTTTATTATTCCTTTNAGGAGGAACTTACTAAACATGGTTAACTTCATGTTGTTCTTTGGTCTAAAATATGTGGCTCTATTTTTGTCTTCACCATGAATGTAGATATTATTTATCAGTTAGGCTCACTGTGAGATAGGATGAAATTCTTGATTTTTCATTCTAGTCAATGTATGTGACTAATGCAGTAAACGTAAATAATCCCAATTTTCATTAGAGATTTTCTAGTCTGAACTTTGATGCAGGGACTTGCTTTCATTCTAGTTTCCCTGAACACCTCAGGAAAATGCATTCCTGTTCAATTGAGTGAAGTAATGTTATGGATCCACAAGGGCATAAATTAAATTGTATATGATTTTTTTATTCTGGATTAGTTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00021	71459	74510	-

Gene family

Gene family	subfamily
Transcription Factors Family	MED6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006357 regulation of transcription from RNA polymerase II promoter

cellular_component
GO:0016592 mediator complex

molecular_function
GO:0001104 RNA polymerase II transcription cofactor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000021s00002691.1	PF04934.9	Med6	23	148	5.40E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.024
SRR1783600	control	21.129
SRR1783602	moderate drought stress	38.867
SRR1811619	moderate drought stress	37.851

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.613
DRR006520	Root Summer glycyrrhizin high producing strain	26.272
DRR006521	Root Winter glycyrrhizin high producing strain	57.739
DRR006522	Root Winter glycyrrhizin high producing strain	56.047
DRR006523	Root Summer glycyrrhizin low producing strain	24.275
DRR006524	Root Summer glycyrrhizin low producing strain	24.159
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.050
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.942

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.509
SRR2868004	Drought Stress (root)	24.894
SRR2967015	Control (root)	30.365

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.518
SRR9715740	Leaf	15.519
SRR9715741	Leaf	12.319
SRR9715739	Root	10.865
SRR9715742	Root	13.824
SRR9715743	Root	12.423

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.732
SRR8749028	MeJA induced 9h	17.315
SRR8749029	MeJA induced 9h	15.573
SRR8749030	Uninduced	10.464
SRR8749031	Uninduced	5.657
SRR8749032	Uninduced	8.740

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.879
SRR8400027	Control - Root	25.454