Gene detail

Gene detail information of Glyur000021s00002688.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G59660.1	1.00E-73	Leucine-rich repeat protein kinase family protein
NR	KEH18251.1	1.99E-152	LRR receptor-like kinase plant [Medicago truncatula]
COG	YP_003154850.1	7.00E-12	serine/threonine protein kinase [Brachybacterium faecium DSM 4810]
Swissprot	tr\|O65924\|Y2921_ARATH	5.00E-80	Putative leucine-rich repeat receptor-like protein kinase At2g19210 (Precursor)
trEMBL	tr\|A0A072TM03\|A0A072TM03_MEDTR	7.00E-153	LRR receptor-like kinase plant {ECO:0000313\|EMBL:KEH18251.1}

Sequence

Transcript Sequence

>Glyur000021s00002688.1
TACAATGATGACACATATGATCGGATATGGCGGTGTGACCCAAATTACGATGAGCATGGTTGGTATCCGTTGAATGGAACGATTGATATTGATGCACGAAAAAACAATGATGAGGACGCATATAAATTGCCAGCGGGAGTATTGAGGACTGCAGCCCAATCAAGGAATGTTTCATACAATTTATCATTTGACCATGGCTTTGTGTTTGATACGCCACTCGACAAGCCTTATGACTATTATGTCTACCTCCACTTTGCTGAAATTGAACAACTCCAGAATGGGCAGAAAAGAATAATCGATATCACCCTTAACTCCAAACCCGTCCCCCCACATCCTTTGGTTCTAGAATACTTGAAGCCCGTTAGTCTTAATTACTCGACTTCAGTTGGTGCTATTCTGGACATCAAGAGTGCCTACCAGATCTCTAGACTGAATTGGCAAGGTGACCCATGTCTTCCTCGGCATTATGCATGGGAAGGTCTCAATTGCACTTCTGACAGTGACACCAATCCAAGGATCACATCTTTGGATTTGTCACACAACGAGTTGGAAGGACCTCTGCCGGAATTTCTGGCACAATTGCCAAAGTTACAAGTGCTTAATCTGACAGGGAACAGGCTTTCGGGTCCAATTCCTAAGGCTCTCAGGGAAAAGGCAAATGTAACTTTGCAATTAAGTGTGGCTGATAATCCTGATCTTTGTATGACGGATTCATGCAAAAAGAAGAACTTTGTTGTACCACTNGTTGCATCACTTTCAGCTTTAATTGTAATCCTCTTGATTTCTCTTGGATTTTGGATATTCAGAAGACAAAAAGTTATGCGTTCTGATTCTAAGAGGGAGGGTTCACTGAAATCAAAATATCGAGCATTCAGTTACACTGAGATTCTCAATATTACTGATAACTTCAAAATTTTTTTTGGAGAAGGAGGATTTGGAAAAGTTTACTTTGGCATTCTACAAGATCACACTCAAGTCGCTGTTAAGTTGCTTTCACCATCGTCGATGCAAGGACTAGATTATCTGCATAATGGCTGTAAACCACCTATTATCCATAGAGATTTGAAGGCTTCCAACATATTACTTTTTTTGAACATGCATGCCAAGATAGCTGATTTCGGTCTAAGTAGAGCTTTTGGTTTTTTTTTTGATTCTCATATATCCACTTGCCCTGCTGGTACACCAGGTTATGTTGATCCAATAACAGGAAACTTCAACAAGAAAAGTGATGTCTACAGCTTTGGGATAGTTCTATTTGAGTTAATCACTGGTCGACAAGCACTAATAAGAGCATTTGGAAAAAACATTCACATACTTGAATGGGTCATTCCCATAGTTGAAAGTGGAGATATTCAAAACATTTTTTTTCCGAGGTTGCAGGGAGAGATCAGTGTCAATTCTGCATGGAAAGTTGTAGTTTTTTTCATGTCATGCACTTCCCCAACTGCAGCTGAAAGGCCAGACATGAGCCAAATATTGGGAGATCTAAAGGAATGTCTATCTTTGGAGATGGTTCAGAGAAATGGCGATTTTTTTAGAACTGTAGTTGATCAGTTGACTTCTTTGCAGATTGAATCAGATGTTGTTTTTTTAGCTAGAGACGATGAACATCCAGGTTTCATAAGCATTGATTGTGGATCAAGCCTGGATTACCGGGACAAGGATAGTGGAATTTGGTATGAGACAGACAAACGGTTTGTGGAAACAGGAATGAATACGGTGATTTCATCCACTACCGACGTGAACTATGCCTACTTTGGGAAGCAGTTGAACACATTGAGATACTTCCCAGAAGGAGACAGGAANTGCTACACGTTGAGACCAGAGCAGGGGAAAAACAATAGGTATCTCATCAGGGCTTTCTTCACATATGGAAATTATGATGGCAAAAACCAAAACCAATCTTTTGAACTTCATCTTGGAGTCAACCTCTGGGACAATGTTAATATGAGTGACTATGGTGNACTGACCCATACACTCACAAATCTCCCATCTACTATATTAGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00021	40475	53965	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.1.5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000021s00002688.1	PF12819.2	Malectin_like	1	120	1.50E-18
Glyur000021s00002688.1	PF12799.2	LRR_4	172	208	2.60E-08
Glyur000021s00002688.1	PF00069.20	Pkinase	336	428	2.90E-19
Glyur000021s00002688.1	PF12819.2	Malectin_like	543	654	3.10E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.156
SRR1783600	control	2.138
SRR1783602	moderate drought stress	1.839
SRR1811619	moderate drought stress	1.514

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.686
DRR006520	Root Summer glycyrrhizin high producing strain	0.757
DRR006521	Root Winter glycyrrhizin high producing strain	1.257
DRR006522	Root Winter glycyrrhizin high producing strain	0.719
DRR006523	Root Summer glycyrrhizin low producing strain	1.332
DRR006524	Root Summer glycyrrhizin low producing strain	0.770
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.787
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.219

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.640
SRR2868004	Drought Stress (root)	0.714
SRR2967015	Control (root)	0.402

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.302
SRR9715740	Leaf	3.215
SRR9715741	Leaf	25.721
SRR9715739	Root	0.012
SRR9715742	Root	0.995
SRR9715743	Root	0.919

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.048
SRR8749031	Uninduced	0.054
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.106
SRR8400027	Control - Root	2.671