Gene detail

Gene detail information of Glyur000021s00002687

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G16370.1	6.00E-140	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	XP_007150584.1	0	hypothetical protein PHAVU_005G164800g [Phaseolus vulgaris]
COG	YP_157666.1	1.00E-16	lipolytic enzyme [Aromatoleum aromaticum EbN1]
Swissprot	tr\|Q9LU14\|APG2_ARATH	7.00E-175	GDSL esterase/lipase APG (Precursor)
trEMBL	tr\|V7BZQ3\|V7BZQ3_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW22578.1}

Sequence

Transcript Sequence

>Glyur000021s00002687.1
ATTTAATGGTCTATGCCTAACTTCCACCCTCCTCCTTCAATGAAAAGGTGTCATTTTCTATTTCCATATATTATAAGTTCTGGTTACACACAGAAGAAAATTAAGCATCCAAAAAAAAAATGATGAACACGAATAGCAAAGAGGCACTTGTTCTACTCTTTGCAACATCTGTCTTCCTAGCTTATTGTGGGTATGCACAAGACACCCTTGTTCCAGCAATCATCACATTTGGTGACTCTGTAGTTGATGTTGGGAATAATGACTACCTCCCCACTATTTTCAAGGCTAATTACCCTCCTTATGGAAGAGACTTTGTTAACCACCAACCTACTGGGAGGTTTTGCAATGGGAAATTAGCTACTGATATCACTGCTGAGACTCTTGGTTTTAAGAGTTATGCACCTGCATATCTTAGCCCACAGGCATCCGGGAAGAACCTCCTTATTGGAGCAAACTTTGCTTCGGCTGGATCTGGTTATGATGAAAAGGCTGCTACTTTGAATCATGCGATCCCATTGTCCCAACAGTTAAACTATTTCAAGGAATATCAAAGCAAGCTGAACCATGTAGCTGGCAGTGAAAAAGCAGCCTCAATCATCAAGGGTGCATTGTACTTATTGAGTGCTGGAAGCACTGACTTTGTGCAAAATTACTATGTCAATCCTTGGATCAACAAAGCCTTCACCCTTGATCAGAAAATTGGAGTGACTTCACTCCCACCGTTGGGTTGCCTACCAGCTGCAAGGACTTTATTTGGTTTCCATGAGGAAGGTTGTGTCTCAAGACTCAACACTGATGCCCAANGATTCAACAAGAAGATCAACTCAGCTGCAGCAAATCTTCAAAAGCAACTTCCTGGTCTTAAGATTGCCATTTTTGATATCTACAAGCCTCTCTATGACCTTGTTCAATCCCCTTCGAATTTCGGTTTTGCGGAGGNAAGGAGAGGTTGCTGTGGTACAGGGATAGTAGAGACAACATCCTTGTTGTGCAATCCAAAATCACCAGGAACTTGTTCTAATGCAACACAGTATGTGTTTTGGGACAGTGTCCATCCTTCACAAGCTGCAAACCAAGTTCTAGCTGATGCATTAATTGTACAAGGCATAGCTCTTATCACATAAGAACTCGTGATTATTTATTTATCTCTATTAAACATTGTCTGTGCGCAACTGCACATCCTGGAAGTGATGCAAAAGTTTCCCTATTTNTCTTGAAGCTGGAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00021	38022	39813	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000021s00002687.1	PF00657.17	Lipase_GDSL	34	177	8.80E-10
Glyur000021s00002687.1	PF00657.17	Lipase_GDSL	193	325	3.40E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.225
SRR1783600	control	3.241
SRR1783602	moderate drought stress	5.650
SRR1811619	moderate drought stress	5.693

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.084
DRR006520	Root Summer glycyrrhizin high producing strain	0.087
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.089
DRR006524	Root Summer glycyrrhizin low producing strain	0.089
DRR006525	Leaf Summer glycyrrhizin high producing strain	78.412
DRR006526	Leaf Summer glycyrrhizin high producing strain	78.591

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.045
SRR2868004	Drought Stress (root)	1.642
SRR2967015	Control (root)	0.581

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	91.553
SRR9715740	Leaf	35.144
SRR9715741	Leaf	19.460
SRR9715739	Root	1.464
SRR9715742	Root	4.828
SRR9715743	Root	4.708

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.058
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.108
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.090

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.898
SRR8400027	Control - Root	9.428