Gene detail information of Glyur000021s00002685 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G50340.1 | 4.00E-167 | ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases |
| NR | XP_003627060.1 | 0 | DNA repair protein radA-like protein [Medicago truncatula] |
| COG | YP_003318757.1 | 1.00E-110 | DNA repair protein RadA [Sphaerobacter thermophilus DSM 20745] |
| trEMBL | tr|G7LGQ6|G7LGQ6_MEDTR | 0 | DNA repair-like proteinRadA {ECO:0000313|EMBL:AET01536.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00021 | 23965 | 30198 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000021s00002685.1 | PF13481.1 | AAA_25 | 202 | 306 | 5.80E-17 |
| Glyur000021s00002685.1 | PF13541.1 | ChlI | 500 | 589 | 1.40E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.666 |
| SRR1783600 | control | 1.592 |
| SRR1783602 | moderate drought stress | 1.024 |
| SRR1811619 | moderate drought stress | 1.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.674 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.695 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.517 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.516 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.447 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.863 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.682 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.224 |
| SRR2868004 | Drought Stress (root) | 2.345 |
| SRR2967015 | Control (root) | 2.900 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.443 |
| SRR9715740 | Leaf | 5.235 |
| SRR9715741 | Leaf | 1.198 |
| SRR9715739 | Root | 0.559 |
| SRR9715742 | Root | 2.282 |
| SRR9715743 | Root | 1.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.794 |
| SRR8749028 | MeJA induced 9h | 1.911 |
| SRR8749029 | MeJA induced 9h | 1.604 |
| SRR8749030 | Uninduced | 0.079 |
| SRR8749031 | Uninduced | 0.147 |
| SRR8749032 | Uninduced | 0.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.191 |
| SRR8400027 | Control - Root | 4.877 |