Gene detail

Gene detail information of Glyur000020s00001845

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G07740.1	actin binding
NR	KEH33431.1	actin-binding FH2 (formin-like) protein, putative [Medicago truncatula]
Swissprot	tr\|Q9FLQ7\|FH20_ARATH	Formin-like protein 20
trEMBL	tr\|A0A072UVL3\|A0A072UVL3_MEDTR	Formin-like protein {ECO:0000256\|RuleBase:RU361260}

Sequence

Transcript Sequence

>Glyur000020s00001845.1
ATGGCGCTGTTCCGAAGGTTATTTTACCGGAAGCCGCCGGATCGACTCCTCGAGATCTCTGACAGGGTCTATGTCTTTGATTGTTGCTTCTCCACGGATGTCTTGGAAGAAGATGAGTACAAAGTTTATATTGGGGGCATTGTAGCTCAGCTACAAGATCACTTTCCAGATGCTTCTTACATGGTGTTCAATTTCAGAGAAGGAGATAGGCGCAGCCAAATTTCAGACATATTATCTCAGTATGACATGACAGTTATGGAATACCCTCGGCAATATGAGGGCTGTCCACTTCTGCCTTTGGAGATGATTCATCACTTCCTTCGATCAGGTGAAAGCTGGCTGTCTTTGGAGGGGCAACAAAATGTGCTTTTGATGCACTGTGAAAGGGGGGGTTGGCCCGTGCTGGCATTTATGCTAGCTGGTCTTCTATTGTACCGGAAGCAGTACAATGGGGAGCAGAAGACTCTTGAAATGGTATACAAGCAAGCACCCAGAGAACTTCTCCAGCTTTTATCTCCTTTGAACCCACAGCCTTCTCAGTTGAGATATCTTCAGTATATTTCCAGGAGACATTTGGGTTCTGAGTGGCCTCCATCAGAAACACCCTTATACTTGGATTGTCTGATTCTTAGAGTTCTTCCGTTATTTGATGGTGGAAAAGGTTGCAGGCCTGTTGTACGTGTTTATGGTCCTGACCCTACAAAACCTGCCAATAGAAGTTCTAAGCTACTATTCTCAACTTCAAAAACCCAAAAACATGCTCACCACTACCTACAGGCAGAATGTATGCTCGTGAAAATTGATATTCATTGTCGTGTTCAAGGGGATGTCGTTCTTGAATGCATACATTTAAGTGAAGATTTCATTCGTGAGGAGATGATGTTTAGAGTCATGTTTCATACTGCATTTGTACGGTCAAATATTTTGATTCTGAGCCGTGATGAAATTGATATTTTGTGGGATGCAAAGGATCAGTTCCCCAAGGATTTTAAATCTGAGGTGCTTTTTTTGGATGCTGATGCTGTTATACCTAATCTAACCACAGTCAATGTGAGTGGAGATGCAAATGACACAGAAAGTGCTTCACCTGAGGAATTCTATGAAGTGGAAGAGATCTTCAGCAATGCAATTGATACACAGGAAGGTAAGGGGGATTATGATTCTTCAATGGCTTATGACAATGCAGTAGATGATGGAAGTCATAAAGAGGTCTGGAAAGAGTATTCAGATCCCCAAACTTTTCAGGATCCTATGCCAGATGATGGGATTCACCAACAGGTTGGAATGACCGATTCTGGCANTAATGTGGTGAAAGACATTACTGTTGATGATGTAAAGTACAACCTCGATCAGAGGTTAGATTCAGATACTCATGCAGTGAAAGATATTACTGTGGATGATGGGGAAAATAAGTCAACTTCCACTGCAGTCACTTTTGATATGGTGAAATCTCTGGAGACAAATGAAGTCACTTTGGGTGTGCATGATGAGTTGGCAGTTATGCAAAACAAGTATGATGAAGATAACAATGCAACACTAAAAGAATTAGAGCCTGAGGAAGGGCAGCAGGTGCATGATCTTTCCGGNTCAAAATCTGATAAACTACTTCCATTTGTTGAAAATAAACAACTTCCTTCAAACTCAAAGCCAGTGGGAGATACACTTACAGCAAAGCAAAAGACTAAACACCAAGAACCACAGGGTCTTCAGGCAAAACATGCAATGCCAAATGCAACAACTAGGCATAATTATTCACCAGCTACTCTGTCAAATGAAACCTCTACAATGGAGAACATGACTGATGCCAAAGGAAGACCTATTTCTAGTTCCCATGACTCTGGAGCAGTTGATTCTGTGGACATGACAAATGACCTCAGAAGTTGTAATGGGGACAATTCAAAATCTTCAGATAGCATAGCAGAAATAGACTCAAACTCTCCACTATCATCATTACCACTAGTTACAGAGACATCTCTTCAGTCAACTACTCAAGTACCACTATTGAGCTCCGATCAAGTGATACGACCTCCCCCTCCCCCTCCAGCCATATCACCATCTTCTTCCTTGGATGGTAAGGTGTCTACAATACCACAGCCGCCGCCNCCACCACCACCACCTACTTTGACATTACTTGGCAAGAAAAATGAAGGGATGAGCTTACTAGATGCCACTACCCCTCCCCCTCCCCCACCATTTTTTGGGAAAAATGGAGGGAGCTTCTTACCTCCTTCTACCAATTGGAAGTCCGTTTATTCATCAAATGCTGCAGTTGGAGAAAATAGTGGTGCTTTACCTCCTCCTATAATAGGAAGTGCAATTACATCAAAAGTTTCTGAATTACTTGCTGCAGTTTCCTTTCCCTGTTCTCCTCCTCCTCCTCCTCCCCCACCACCACCACCACCACCTCCACCTCCAAAGCATGGAGTTACATCCATTCCTCCCCCTGCCCCTCCCCCTCCCCCACCTCCTTTGTCCTCTATAGATAGAGCCCCACTCTTTCCTCCCTCAACACCCCCAACATCACTTAAAGCTCCATTCCCACCGCCACCGCCACCGCCTCCACCACCACTGCCTCCTCCTCCTATATGTAGAGCTCCAACATCACCGTCTTCATCTCCTTTTAGTAGAGCACCACCACCACAACCTCCAACACCTCCACCTCCACCTCCTTTTAGTATAGCGCCATTGCCACCACCTCCACCTCCTATTAGTAGAGCTCCACCACCTCCACCACCACCACCTCTTCCTCCATCAAGTGGAGCACCTCCTCCACCACCACCACCACCACCACCTCCTTCAATGTCTAGAGCCCCACCCCCTCCAACTCGTGGAGCTCCACCACCACCACCTCCAACTCCACCTCTACCTCCTAGTAGTAGAGCTCCACCACCTCCACCTCTTCCTTCAAGTGAAGCACCACCTCCACCTCCACCACCTGCACCACCTCTTCCTCCATCAAGTGGAGCACCTCCTCCTCCTCCACCACCACCACCACCTCCTTCAATGTCTAGAGCCCCACCCNCTCCAACTTGTGGAGCTCCACCACCACCACTTCCTCCATCAAGTGGAGCACCTCCTCCACCACCACCACCTCCAATGACTGGAGCACCCCCTCCCCCACCCCCAATGCGTGGACCTCCACCTCCACCTCCACCAAATCCAATGCATGGAGCACCACCTCCTCCNCCACCTCCAAATGGTCGAGGACCACCTCCACCGCCTCCTCCTGGAGCTCAGGCTCCTGGTGCTCCTAGACCTCCAGGTGGTGCTCCGCCACCACCTCCACAAGGTGCAGCTGGAGCTGGTCCAAGAGGGAGAGGACGTGGACTTGCAGGTCCTACAGGTGCTGGTGCAATGGCAACCCGACGATCTTCCTTAAAGCCTCTTCATTGGAGTAAGGTAACAAGGGCATTGCAAGGAAGTTTATGGGAAGAATTACAAAGACACGGAGAACCTCAAATTGCACAAGAGTTTGACGTTTCAGAGTTAGAGAAGTTTTTTTCTGCAAATGTTCCAAAACCTGCTGATTCCGGTGGCAAAGACCGGCGCAAATCTGCTGGATCCAAAACTAACAAAATCACCTTGACTGCAGTACTGGCTATGGACGAGTCAGTGTTAGATGTTGATCAGGTGGAAAATCTCATTAAATTTTGTCCTACCAAAGAGGAGATGGAACTTTTGAAGGGATACACTGGTGACAAGGAGAATTTGGGAAAGTGTGAACAGTATTTTTTGGAGCTGATGAAAGTGCCACGAGTGGAGTCAAAATTAAGAGTATTCTCTTTCAAGATTCAGTTTCGGTCTCAGATTACAGAGTTTAAGAAGAGTTTAAACACAGCGATGTCTGCCTGTGAAGAGGTCCGAAATTCACTCAAATTGAAGGATATTATGAAGAAAATTCTTTATTTGGGCAATACGTTGAATCAAGGGACAGCAAGGGGTATGCCTTTTTTTAGTAATGGCAGTGTCATAGCTGAAAAATCTCCAACACTCCTTGATTTTCACCTTGACCTTGTTAGCATAGAACCCGCCACTAAGTCATTAGCAGAAGAAATGCAGGCACTCATCAAGGGATTAGAAAAAGTAAAACAGGAGCTTGCTGCATCTGAAAATGATGGCCCTGTGTCTGAAGTTTTTCGTAAGACATTGAAAGAATTCATTGCTGTAGTTGACTCAGAGGTGGCATCTGTATCAAACCTATATTCTGTGGTGGGTAGAAATGCAGACGCACTTTCACTATATTTTGGCGAGGATCCTCTCAAATGTCCATTTGAGCAAGTTGCTGTAACTCTCTTAAATTTTACAAGGTTGTTTCGCAAAGCACATGAAGAGAATTGCAAACAAGCAGAGTTAGAGAAGAAGAAAGCTGAGAAAGAGGCTGAAATGGAGAAGGCTAAAGGCATTAACTTGACAAAGAAGAGTGGAAAAGACAAAGTAGAAGAAAGCTGAGAAAGGGACTGAAATGGAGAAGGCTAAGGGCATTAACTTGACAAGGAAGAGTGCAAAAGATAGCTGAAGACTGGGTTGTCTACTCCTTTGCACCGACATCATTCTCATGCCGAAGAGCAGAGATCTACCCGTGGGTAGTAAGGGGACTGCTTCTGAGATTGAACTAAGTAGCCTCCCTTTTCAAGATGATGGTGTGACAATTAGCCTCTGGAGGTCGTCTAATGAGGTGGTATTGCAAATTCTTGCCACATGCAGACCTTTGAATATACAAAAGGCTTTAGGAGTTGATTCTTTGATGGCATGTTATGGAATAAGAATTTTGTTGATCTATCGCGGCAGAATATTCTGGAGAGGCCAAACTTAGACCCAGCATGGATGCTTACTGAGATTGCTTGAGAATCCATCTGCATCTAGTGTATGCTGTGAAGATGATGGATCTGGTCCTTCGGTTTGAGAAGAAATTTTGAAGTAGAACATGCCTTCTATTGCAAAAGAACCGGCTTTGGCTTTCATCGTTCATTGGCATATTTTCCAGCACGGGAGCAGATGCTTTCGGATTGTGAAGCACCAAAGTCCAACAGTAGTACCATGAAACCTTGTACAAAGTTCTAACCCTCTTCTTTAGGATCCAATTCTTTCTCATGTAACATAGAAATTAGTTTCTCTTGTAATAGAGATTTTGGTAGGATAACCCCCCCCCCCCCAAAAAAAAAGCTTATGTTGTATAGCTCTCAGGTTAAGAAAAAAATTTAGAAATCAGGTNTCTGTATTGTAACTATAATATTAGTAAAGA

Protein Sequence

>Glyur000020s00001845.1
MALFRRLFYRKPPDRLLEISDRVYVFDCCFSTDVLEEDEYKVYIGGIVAQLQDHFPDASYMVFNFREGDRRSQISDILSQYDMTVMEYPRQYEGCPLLPLEMIHHFLRSGESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEQKTLEMVYKQAPRELLQLLSPLNPQPSQLRYLQYISRRHLGSEWPPSETPLYLDCLILRVLPLFDGGKGCRPVVRVYGPDPTKPANRSSKLLFSTSKTQKHAHHYLQAECMLVKIDIHCRVQGDVVLECIHLSEDFIREEMMFRVMFHTAFVRSNILILSRDEIDILWDAKDQFPKDFKSEVLFLDADAVIPNLTTVNVSGDANDTESASPEEFYEVEEIFSNAIDTQEGKGDYDSSMAYDNAVDDGSHKEVWKEYSDPQTFQDPMPDDGIHQQVGMTDSGXNVVKDITVDDVKYNLDQRLDSDTHAVKDITVDDGENKSTSTAVTFDMVKSLETNEVTLGVHDELAVMQNKYDEDNNATLKELEPEEGQQVHDLSGSKSDKLLPFVENKQLPSNSKPVGDTLTAKQKTKHQEPQGLQAKHAMPNATTRHNYSPATLSNETSTMENMTDAKGRPISSSHDSGAVDSVDMTNDLRSCNGDNSKSSDSIAEIDSNSPLSSLPLVTETSLQSTTQVPLLSSDQVIRPPPPPPAISPSSSLDGKVSTIPQPPPPPPPPTLTLLGKKNEGMSLLDATTPPPPPPFFGKNGGSFLPPSTNWKSVYSSNAAVGENSGALPPPIIGSAITSKVSELLAAVSFPCSPPPPPPPPPPPPPPPPKHGVTSIPPPAPPPPPPPLSSIDRAPLFPPSTPPTSLKAPFPPPPPPPPPPLPPPPICRAPTSPSSSPFSRAPPPQPPTPPPPPPFSIAPLPPPPPPISRAPPPPPPPPLPPSSGAPPPPPPPPPPPSMSRAPPPPTRGAPPPPPPTPPLPPSSRAPPPPPLPSSEAPPPPPPPAPPLPPSSGAPPPPPPPPPPPSMSRAPPXPTCGAPPPPLPPSSGAPPPPPPPPMTGAPPPPPPMRGPPPPPPPNPMHGAPPPPPPPNGRGPPPPPPPGAQAPGAPRPPGGAPPPPPQGAAGAGPRGRGRGLAGPTGAGAMATRRSSLKPLHWSKVTRALQGSLWEELQRHGEPQIAQEFDVSELEKFFSANVPKPADSGGKDRRKSAGSKTNKITLTAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKENLGKCEQYFLELMKVPRVESKLRVFSFKIQFRSQITEFKKSLNTAMSACEEVRNSLKLKDIMKKILYLGNTLNQGTARGMPFFSNGSVIAEKSPTLLDFHLDLVSIEPATKSLAEEMQALIKGLEKVKQELAASENDGPVSEVFRKTLKEFIAVVDSEVASVSNLYSVVGRNADALSLYFGEDPLKCPFEQVAVTLLNFTRLFRKAHEENCKQAELEKKKAEKEAEMEKAKGINLTKKSGKDKVEES

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	599542	611924	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0045010 actin nucleation

cellular_component
GO:0005884 actin filament

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001845.1	PF10409.4	PTEN_C2	200	336	1.00E-27
Glyur000020s00001845.1	PF02181.18	FH2	1123	1192	1.10E-06
Glyur000020s00001845.1	PF02181.18	FH2	1196	1314	4.10E-38
Glyur000020s00001845.1	PF02181.18	FH2	1323	1438	1.30E-15
Glyur000020s00001845.2	PF10409.4	PTEN_C2	200	336	1.00E-27
Glyur000020s00001845.2	PF02181.18	FH2	1123	1192	1.10E-06
Glyur000020s00001845.2	PF02181.18	FH2	1196	1290	2.20E-26
Glyur000020s00001845.2	PF02181.18	FH2	1286	1402	6.10E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.414
SRR1783600	control	2.416
SRR1783602	moderate drought stress	1.340
SRR1811619	moderate drought stress	1.298

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.784
DRR006520	Root Summer glycyrrhizin high producing strain	1.651
DRR006521	Root Winter glycyrrhizin high producing strain	1.135
DRR006522	Root Winter glycyrrhizin high producing strain	1.098
DRR006523	Root Summer glycyrrhizin low producing strain	0.645
DRR006524	Root Summer glycyrrhizin low producing strain	0.694
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.386
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.313

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.788
SRR2868004	Drought Stress (root)	5.349
SRR2967015	Control (root)	5.955

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.198
SRR9715740	Leaf	0.903
SRR9715741	Leaf	1.255
SRR9715739	Root	0.236
SRR9715742	Root	2.284
SRR9715743	Root	1.550

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.236
SRR8749028	MeJA induced 9h	5.278
SRR8749029	MeJA induced 9h	2.040
SRR8749030	Uninduced	2.626
SRR8749031	Uninduced	1.641
SRR8749032	Uninduced	1.387

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.665
SRR8400027	Control - Root	5.945