Gene detail

Gene detail information of Glyur000020s00001840

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68710.1	0	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
NR	KHN26271.1	0	Putative phospholipid-transporting ATPase 9 [Glycine soja]
COG	NP_266834.1	3.00E-18	cation-transporting ATPase [Lactococcus lactis subsp. lactis Il1403]
Swissprot	tr\|Q9SX33\|ALA9_ARATH	0	Putative phospholipid-transporting ATPase 9
trEMBL	tr\|I1JWS3\|I1JWS3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G33080.1}

Sequence

Transcript Sequence

>Glyur000020s00001840.1
CTTGGAGTGGGAAGAGCAAATAGTCTCTCCATGACCATCTTAGTGGGTCCATTTTCTACCTCTCTTTTTTGGATTAATTAATTAATTTTGCCAATTGGATGAAAGAAGATTGAGGGGGGTGGCATTGGAATGAGGATGATGAAGCTTCATTTCAGCAAGATCTATTCATTTGCATGTGGTAAAGCAACTTTCAGGAGAGATCATTCACAGATTGGTGGGCAAGGGTATTCTAGGGTGGTCTTCTGCAATGAACTAGATGGCTTTGAGACAACAGGGTTTAGGAACCATGCTGGTGCTGATAATTCTGTCAGGTCCACAAAGTACACTGTTGCTACTTTCTTGCCAAAGTCACTGTTTGAGCAGTTTAGGAGGGTTGCCAATTTCTATTTCTTGGTGGCTGGCATCTTGGCCTTCACAAAGCTTGCTCCTTATACAGCTGTCAGTGCTATCCTCCCTCTGTGTATCATCGTTGGGGCAACTATGGTGAAAGAGGGTGTTGAAGATTGGCGTCGGAAAAAGCAGGATATTGAGGTGAACAATAGAAGAGTCATATTTCATAAAGGTGATGGCAATTTTGAATATACGGAGTGGAAGAATCTCAGGGTGGGGAATATAGTGAAAATAAAGAAGGATGAATTCTTCCCAGCTGACCTCCTACTGCTTTCATCCAGTTATGAGGATGCCGTCTGCTATGTCGAGACCATGAACTTGGATGGGGAGACAAATTTGAAGTTAAAACAAGGGTTGGATGTAACTTCTTCCTTAAACGAAGACTTCAAATTCTGCAATTTCAAAGCTACCGTAAAATGTGAAGACCCAAATGCAAATTTGTACTCATTTATTGGGAGCATGGAGTTTGAAGGGCAAAAATATCCCCTTTCTCCTCAGCAACTTCTTCTGAGAGACTCTAAACTTCGTAATACAGACTACATATTTGGAGCAGTTATCTTTACTGGTCATGACACGAAGGTTATTCAAAATGCCACTGACCCCCCTTCAAAAAGAAGCAAAATTGAGAAGAAGATGGATAAGATNATCTACTTCTTATTTTGTGTATTGTTTTTAATCGCTTTTGTCGGATCTATTCTCTTTGGCATTGCAACTAAAGGTGACCTGGACAATGGGTTGATGAAAAGATGGTATCTAAAACCAGATGATTCCACCATTTTCTTTGATCCTAAAAGAGCAGCTGCAGCTGCTACATTTCATTTTTTGACAGCATTAATGTTATATAGCTTCTTCATTCCCATCTCCTTGTATTTCTCAATAGAAATGGTCAAGGTCCTTCAGAGCATCTTCATTAATCAAGATATTCATATGTACTATGAAGAAGCAGACAGACCAGCTCGTGCCCGTACTTCAAACTTGAATGAGGAACTTGGTCAAGTTGACACAATACTTTCTGATAAAACTGGAACTCTGACCTGCAACTCAATGGAGTTCATCAAATGTTCTGTTGGTGGGGTAGCTTATGGCCGTGCTGTTACAGAGGTTGAGCAAGCCATTGGTACAAGTAATGGGTCAGCTATGATTCATGGACATGTTAATAGGTTCGAATCAAAATTAGATGAGATCAGGGAATCTCCTGATAGAAAAGAACCCATCAAAGGTTTTAACTTTATAGATGAAAGGATAATGAATGGAAACTGGGTTAATGAGCCTCATGCAGATGTTATACAGAAGTTTTTCCGATTATTGGCCATGTGTCATACTGCCATACCAGAAGTGGATGAAGACACAGGAAATATCTCATATGAAGCTGAATCTCCAGATGAAGCAGCATTTGTGATTGCTGCAAGAGAAGTTGGTTTTAAATTCTACAAAAGGACTCAGACTAGTTTATCAATGTATGAGTTGGATCCAGTTTCTGGCGATGAAGTTGAAAGGATGTACAAGATTCTCAATGTTTTAGAATTCAATAGCTCTAGGAAGCGAATGTCGGTGATAGTGAAAGACGAAGAAGGGAGAATTTTGCTACTCTGTAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCCAAGAATGGGAGGGAGTTTGAAGAGAAAACTTTGGAACATGTGAATGAATATGCTGATGCAGGTCTAAGAACTCTGATACTGGCCTATCGTGAACTTGACGAAGAAGAATATAAGGCATTTCATAATAAATTTTCTGAAGTAAAAAATTTAGTGACTATAGATCGGGAATCACTGATTGAGGAAGTATCAGATAAGATTGAGAGGAATCTAATCCTTCTGGGCGCCACTGCTGTAGAAGACAAGCTCCAAAATGGGGTTCCTGACTGTATTGACAAGCTTGCCCAAGCTAGAATTAAGATATGGGTTTTGACCGGTGATAAAATGGAGACCGCCATCAACATTGGTTTTTCTTGTCGCTTGCTTAGACAAGGAATGAAACAGATCATAATTCATTTGGAGATTCCAGAAATTCAAGCATTGGAAAAGGTTGGAGACAAGATGGCTATTGCCAAGGCATCAAGGGAAAGTGTGTACCGTCAGATATCTGAAGGTTCTAAGCTGCTTTCTGCATCCAGAGGGACCTCTCAGCAGGCATTTGCTCTGATAATTGATGGAAAATCACTTGTTTATGCTCTAGAGGATCAAATAAAGAACATGTTTTTAGAGCTTGCAACTCGCTGTGCATCTGTTATCTGCTGTCGCTCATCGCCAAAGCAGAAGGCACTGGTTACTAGACTGGTCAAACATGGAACCGGTAAAACAACATTAGCTATTGGTGATGGAGCTAATGATGTGGGAATGCTTCAAGAAGCTGATGTAGGGGTTGGAATCAGTGGTGTTGAAGGAATGCAGGCGGTTATGTCTAGTGATATTGCAATNGCACAGTTCCGGTATTTGGAAAGATTACTTCTTGTACACGGACATTGGTGTTACCGGAGGATGTCATCAATGATATGCTATTTTTTTTATAAGAACATCGCATTTGGATTCACCCTATGCTTATATGAGGTGTATGCATCATTCTCTGGACAGCCTGCATACAATGACTGGTACTTATCTCTCTATAGTGTCTTCTTTTCGTCGCTCCCGGTGATTGCCCTAGGGGTCCTTGACCAGGATGTATCTGCCAGCTGGCGTCGAATTCTCAGCTGGATGCTTAATGGATTCATTAGCGCCATCATGATTTTCTTTTTCTGCACAAAAGCAATGGAGGTTCAGGCCTTTGACGAGGAGGGAAGAACTGCCGGGAAGGACATGCTGGGAGCAACCATGTATACATGCGTGGTCTGGGTCGTGAGCTTGCAGATGGCACTCGCGGTGCGTTACTTCACCTTGATACAACACGTTGCCATATGGGGTTCGGTTGCTTTCTGGCATCTCTTCCTTTTGGTATATGGAGCTATTCCTCCAACCATTTCTACAAATGCTTACAAAGTCTTCGTTGAGACCCTTGCTCCATCTCCATCCTATTGGATTGTCACATTCTTTGTGGCGATCTCTACACTTATACCATACATCTCATGTTCCACCATTCAGATGTGGTTCTTTCCCATGCATCACGAANTGAAAGAATCCAATGCTGTGATATTCATGCTGAGGCAAAAATCGTTGCTGCCTACAACGGCGCACTTTGCGGCTAAGGTTATCCACAAGCAGACACATCACTACTAA

Protein Sequence

>Glyur000020s00001840.1
MRMMKLHFSKIYSFACGKATFRRDHSQIGGQGYSRVVFCNELDGFETTGFRNHAGADNSVRSTKYTVATFLPKSLFEQFRRVANFYFLVAGILAFTKLAPYTAVSAILPLCIIVGATMVKEGVEDWRRKKQDIEVNNRRVIFHKGDGNFEYTEWKNLRVGNIVKIKKDEFFPADLLLLSSSYEDAVCYVETMNLDGETNLKLKQGLDVTSSLNEDFKFCNFKATVKCEDPNANLYSFIGSMEFEGQKYPLSPQQLLLRDSKLRNTDYIFGAVIFTGHDTKVIQNATDPPSKRSKIEKKMDKXIYFLFCVLFLIAFVGSILFGIATKGDLDNGLMKRWYLKPDDSTIFFDPKRAAAAATFHFLTALMLYSFFIPISLYFSIEMVKVLQSIFINQDIHMYYEEADRPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVGGVAYGRAVTEVEQAIGTSNGSAMIHGHVNRFESKLDEIRESPDRKEPIKGFNFIDERIMNGNWVNEPHADVIQKFFRLLAMCHTAIPEVDEDTGNISYEAESPDEAAFVIAAREVGFKFYKRTQTSLSMYELDPVSGDEVERMYKILNVLEFNSSRKRMSVIVKDEEGRILLLCKGADSVMFERLAKNGREFEEKTLEHVNEYADAGLRTLILAYRELDEEEYKAFHNKFSEVKNLVTIDRESLIEEVSDKIERNLILLGATAVEDKLQNGVPDCIDKLAQARIKIWVLTGDKMETAINIGFSCRLLRQGMKQIIIHLEIPEIQALEKVGDKMAIAKASRESVYRQISEGSKLLSASRGTSQQAFALIIDGKSLVYALEDQIKNMFLELATRCASVICCRSSPKQKALVTRLVKHGTGKTTLAIGDGANDVGMLQEADVGVGISGVEGMQAVMSSDIAXAQFRYLERLLLVHGHWCYRRMSSMICYFFYKNIAFGFTLCLYEVYASFSGQPAYNDWYLSLYSVFFSSLPVIALGVLDQDVSASWRRILSWMLNGFISAIMIFFFCTKAMEVQAFDEEGRTAGKDMLGATMYTCVVWVVSLQMALAVRYFTLIQHVAIWGSVAFWHLFLLVYGAIPPTISTNAYKVFVETLAPSPSYWIVTFFVAISTLIPYISCSTIQMWFFPMHHEXKESNAVIFMLRQKSLLPTTAHFAAKVIHKQTHHY

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	569684	576131	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015914 phospholipid transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0000287 magnesium ion binding

GO:0004012 phospholipid-translocating ATPase activity

GO:0005524 ATP binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001840.1	PF00122.15	E1-E2_ATPase	113	386	1.10E-13
Glyur000020s00001840.1	PF12710.2	HAD	423	879	2.10E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.812
SRR1783600	control	7.029
SRR1783602	moderate drought stress	7.429
SRR1811619	moderate drought stress	7.532

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.223
DRR006520	Root Summer glycyrrhizin high producing strain	6.959
DRR006521	Root Winter glycyrrhizin high producing strain	2.088
DRR006522	Root Winter glycyrrhizin high producing strain	2.053
DRR006523	Root Summer glycyrrhizin low producing strain	6.400
DRR006524	Root Summer glycyrrhizin low producing strain	6.510
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.039
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.277

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.501
SRR2868004	Drought Stress (root)	12.055
SRR2967015	Control (root)	11.849

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.661
SRR9715740	Leaf	6.813
SRR9715741	Leaf	7.899
SRR9715739	Root	1.063
SRR9715742	Root	9.349
SRR9715743	Root	8.775

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.218
SRR8749028	MeJA induced 9h	3.723
SRR8749029	MeJA induced 9h	0.694
SRR8749030	Uninduced	1.593
SRR8749031	Uninduced	0.194
SRR8749032	Uninduced	0.299

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.531
SRR8400027	Control - Root	17.346