Gene detail

Gene detail information of Glyur000020s00001837

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G26670.1	7.00E-59	Vesicle transport v-SNARE family protein
NR	XP_004500015.1	3.75E-101	PREDICTED: vesicle transport v-SNARE 13-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9SEL5\|VTI12_ARATH	8.00E-81	Vesicle transport v-SNARE 12
trEMBL	tr\|V7AY13\|V7AY13_PHAVU	3.00E-101	Uncharacterized protein {ECO:0000313\|EMBL:ESW10155.1}

Sequence

Transcript Sequence

>Glyur000020s00001837.1
AACCAAGCGTCGTTCTTCTTCTTCTTCTTCTTCTTCGATTCCTCTCCTTCGTATACGTTTTGGGCGAGCTCTGTTTGGGTTCACCGCCTCCTCTCCTCCGATCAATCTCCGGCGATCTTTCCGAATTGGGATTGGATAGAGAAATCGGGAACGATGAGTGAGGTATTTGATGGGTACGAACGTCAATACTGTGAGCTATCGGCGAGTCTTTCGCGGCAATGCACTGCAGCTTCTGCTCTTGATGGAGAACTGAAGAAGCAGAAACTTTCTGAAATAAAAGCTGGATTAGATGATGCTGATACATTGATTCGGAAAATGGACCTTGAGGCTAGGAGTTTGCAACCAATTAAAAGAGTCACATCAGCTAATGTCAGCCTCACTGCTCGAGATGAGTTGTTGGAGTCAGGAAGGGCTGATTCATTGGCGATGAAGATACTAGTTGGGAGCTCTGAGATCACGATGCTGAGGAGGCCAGAATATGGGCCTCCAAGCCATACTATGCTTCTTATGTACAGAAAATGGATACAGAAAATGGATAGATTTAAAAAATTTAGCCTCTCTTCATTTATCACGCATTCTCATTCCAACCTATGGATGCTAGGACAGGTATCAAATGATCAAAAAGGAAGACTTTTGATGTCTACTGAGAGATTGAATCAGTCCACTGATAGGATAAAGGAGAGCAGAAGAACAATGCTGGAGACGGAGGAGCTTGGTGTCTCTATCCTCCAAGATTTGCATCAACAACGTCAATCTCTACTCCATGCCCATAAGACGCTCCATGGAGTGGATGATAATATTAGCAAGAGCAAGAAGATTTTGACAGCCATGTCAAGAAGGATGAGCAGGAACAAATGGATTGTTACCTCCTTGATGACAGCTCTGATCCTNGCAATTATATTCATTCTATATTTTAAGCTGACTCATTAGCCTGCGATCTTTGCTTGTTATATGGCTTAGTTATATCTCAGATTGGGGTGTATGCTGCCGATCAATGTGACAGTGTTTGAAGAGTTGCGTGAGCAATAGTTCTCACCTATTTCTCTTATTACATGTAAAATTCACCTATTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	560057	562394	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0016192 vesicle-mediated transport

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001837.1	PF05008.10	V-SNARE	63	115	2.70E-13
Glyur000020s00001837.1	PF12352.3	V-SNARE_C	216	281	7.40E-23
Glyur000020s00001837.2	PF05008.10	V-SNARE	63	141	5.90E-24
Glyur000020s00001837.2	PF12352.3	V-SNARE_C	179	244	5.60E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.542
SRR1783600	control	11.426
SRR1783602	moderate drought stress	12.864
SRR1811619	moderate drought stress	12.829

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.218
DRR006520	Root Summer glycyrrhizin high producing strain	10.846
DRR006521	Root Winter glycyrrhizin high producing strain	1.529
DRR006522	Root Winter glycyrrhizin high producing strain	1.575
DRR006523	Root Summer glycyrrhizin low producing strain	9.043
DRR006524	Root Summer glycyrrhizin low producing strain	9.223
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.157
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.248

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.901
SRR2868004	Drought Stress (root)	32.394
SRR2967015	Control (root)	26.212

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.422
SRR9715740	Leaf	12.504
SRR9715741	Leaf	9.518
SRR9715739	Root	7.051
SRR9715742	Root	7.788
SRR9715743	Root	8.760

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.247
SRR8749028	MeJA induced 9h	1.942
SRR8749029	MeJA induced 9h	0.651
SRR8749030	Uninduced	1.773
SRR8749031	Uninduced	1.111
SRR8749032	Uninduced	0.485

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.438
SRR8400027	Control - Root	24.955