Gene detail information of Glyur000020s00001834 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G74400.1 | 7.00E-66 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_007138164.1 | 0 | hypothetical protein PHAVU_009G185600g [Phaseolus vulgaris] |
| Swissprot | tr|Q9CA73|PP119_ARATH | 6.00E-75 | Putative pentatricopeptide repeat-containing protein At1g74400 |
| trEMBL | tr|V7AZX5|V7AZX5_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW10158.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00020 | 543335 | 546719 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000020s00001834.1 | PF12854.2 | PPR_1 | 4 | 37 | 3.50E-10 |
| Glyur000020s00001834.1 | PF13041.1 | PPR_2 | 74 | 122 | 1.10E-11 |
| Glyur000020s00001834.1 | PF13041.1 | PPR_2 | 156 | 205 | 6.10E-21 |
| Glyur000020s00001834.1 | PF13041.1 | PPR_2 | 219 | 255 | 3.00E-08 |
| Glyur000020s00001834.1 | PF13041.1 | PPR_2 | 355 | 403 | 2.90E-11 |
| Glyur000020s00001834.1 | PF01535.15 | PPR | 434 | 457 | 0.012 |
| Glyur000020s00001834.1 | PF01535.15 | PPR | 463 | 488 | 4.80E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.363 |
| SRR1783600 | control | 0.323 |
| SRR1783602 | moderate drought stress | 0.576 |
| SRR1811619 | moderate drought stress | 0.582 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.976 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.989 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.400 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.524 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.686 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.320 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.565 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.032 |
| SRR2868004 | Drought Stress (root) | 0.759 |
| SRR2967015 | Control (root) | 1.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.323 |
| SRR9715740 | Leaf | 0.535 |
| SRR9715741 | Leaf | 0.447 |
| SRR9715739 | Root | 0.911 |
| SRR9715742 | Root | 1.578 |
| SRR9715743 | Root | 1.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.641 |
| SRR8749028 | MeJA induced 9h | 3.891 |
| SRR8749029 | MeJA induced 9h | 2.002 |
| SRR8749030 | Uninduced | 1.475 |
| SRR8749031 | Uninduced | 0.424 |
| SRR8749032 | Uninduced | 0.843 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.458 |
| SRR8400027 | Control - Root | 1.513 |