Gene detail

Gene detail information of Glyur000020s00001832.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G03220.1	fucosyltransferase 1
NR	XP_004500010.1	PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like [Cicer arietinum]
Swissprot	tr\|Q9M5Q1\|FUT1_PEA	Galactoside 2-alpha-L-fucosyltransferase
trEMBL	tr\|I1KCV1\|I1KCV1_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G21090.1}

Sequence

Transcript Sequence

>Glyur000020s00001832.1
CTATCATATGCATATCATTAGTGACTCGGTAATTGGAAGGAACAGTGTTCCAATGTTGAGAAGAACGCAACGCAAGTAATATAGTTAGTCACNGAATGTTTCGTTTATTTTAACGAGTGCTAGCTGCCTGCAGCATCAGATCGGTAACAGTAAGACCGTGTTTGGGGGTAAAGCTTACTAGGAAGCAGAAAGCAGTGGTTGGTTTGGTGGATCCAACGAGCATTGGATCCGTTGGAGAGAGCTGACATGATTATGAAGAGGTTCCATAGGAATCACGACAACGACGAATACGACTCGGAAGAAACTCGGTGGTCCTCCTCCGTTTCCAACAGGAAATGCCCCTCCTTCACTTCCACGCGCCTCGTCGCTCTCTTTCTGCTTACTCTCTTCCTCCTCTTCTCACTCTCCTTCCTCCTTCCATCACACCCACCCACAACCACTCTCCTCCAACTCAAACAAACTCAACATCAACAAGGTTTGAACAGTGATGCCTCTGATTCTGGTGAGTTCCTAAAAGATAAACTACTGGGTGGCCTTCTAGCAGNTGGATTTGATGAGGGATCCTGTCTCAGCAGGTATCATTCAGTTGCATATCACAAAGGACTATCAGGGAATCCATCTTCTTACCTCATTTCTAGATTAAGAAAATATGAAGCTCTCCACNAAGAATGTGGACCTTATACTGAATCCTATAATAAAACGGTGAAAGATCNCAGTTCTGGTCATTTGAGTGAGTCCCCGGCTTGTAAATATGTAGTATGGATTTCATATAGTGGGTTAGGGAACAGGATATTGACCTTAGCTTCTGCATTTCTTTATGCTCTCCTCACAAACCGTGTTCTTTTGGTTGATCCTGGAGTTGATATGGTTGATCTCTTTTGTGAACCATTTCCAGATGTTTCTTGGTTTCTCCCTCCTGATTTCCCTCTTAACACTCAATTTCATAGTTTCAATCAGAAATCTGATCAATGTTATGGGAAAATGCTGAAAAATGTTAAATCAATTACAAATTCCGCAGTGCCTTCTTTTGTCTACCTTCATCTGGCCCATGATTATGATGACCAGGATAAGCTTTTCTTCTGTGATGAAGACCAAAATTTTCTGCAGAAAGTGCCTTGGTTAGTGGTGAGAACAGATAATTACTTTATCCCATCTCTATTCTTGATGCCATCTTTTGAGCAGGAACTGAGGGATCTCTTTCCNAACAAGGAAACAGTTTTCCATTTCTTGGGCAGATATTTGTTCCACCCCACAAACAGAGTATGGGGACTTGTTATGAGATACTACCAAGCTTATTTAGCTAATGTTGATGNAAGAGTAGGCATCCAGGTCAGAGTGTTTGACACTAGACCTGGTCCATTTCAATATGTATTGGATCAGATCTTAGCTTGTACTTTGAAGGAGAATCTCTTGCCTGGTGTTGAGAGGAAGAAGGATGTAGCTAGTTCATTAGGAAAACCAAAGTCAAAAGCAGTACTGATGACATCCTTAAGCTCTGGTTATTTTGAAATGTTAAGAGACATGTATTGGGAATATCCTACCGTGACTGGAGAAGCTGTTGGCATTTACCAGCCAAGCCATGAGGAATACCAACAAACTGAGAAGCAGATGCACAACCAGAAAGCTTGGGCAGAAATGTATCTCTTGAGCTTAACCGATCAGNTGGTCACTAGCTCATGGTCTACTTTTGGCTATGTGGCGCAGGGTCTTGGAGGTTTAAAACCATGGATACTCTACAAACCTGAGAATGAAACAACTCCTGATCCTCCTTGTCAACGTGCTATGTCAATGGAGCCATGTTTCCATGCTCCCCCTTTCTATGATTGCAAGGCTAAGAGAGGAACCGACACAGGTGCACTTGTTCCACATGTAAGGCACTGTGAGGATATGAGCTGGGGTCTTAAGCTTGTAGACAATTATGGTTAGCTAGTTATTACAGTCATGAATGCCATTATGACTTTCAAAACTCTNAGAGCTGCAAATTTTGTTGTACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	538919	541760	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT37

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0042546 cell wall biogenesis

cellular_component
GO:0016020 membrane

molecular_function
GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001832.1	PF03254.8	XG_FTase	71	529	4.10E-231

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.312
SRR1783600	control	17.459
SRR1783602	moderate drought stress	10.121
SRR1811619	moderate drought stress	9.887

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.477
DRR006520	Root Summer glycyrrhizin high producing strain	11.336
DRR006521	Root Winter glycyrrhizin high producing strain	10.820
DRR006522	Root Winter glycyrrhizin high producing strain	10.571
DRR006523	Root Summer glycyrrhizin low producing strain	8.947
DRR006524	Root Summer glycyrrhizin low producing strain	9.019
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.791
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.711

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.955
SRR2868004	Drought Stress (root)	11.642
SRR2967015	Control (root)	11.152

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.887
SRR9715740	Leaf	4.046
SRR9715741	Leaf	5.139
SRR9715739	Root	17.593
SRR9715742	Root	25.113
SRR9715743	Root	22.600

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.385
SRR8749028	MeJA induced 9h	13.299
SRR8749029	MeJA induced 9h	9.690
SRR8749030	Uninduced	7.338
SRR8749031	Uninduced	1.773
SRR8749032	Uninduced	2.542

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.273
SRR8400027	Control - Root	18.996