Gene detail

Gene detail information of Glyur000020s00001828.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G61430.1	2.00E-103	NAC domain containing protein 100
NR	KHN48695.1	4.76E-161	NAC domain-containing protein 100 [Glycine soja]
Swissprot	tr\|Q9FLJ2\|NC100_ARATH	9.00E-134	NAC domain-containing protein 100
trEMBL	tr\|K7KMI5\|K7KMI5_SOYBN	8.00E-161	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G00930.2}

Sequence

Transcript Sequence

>Glyur000020s00001828.1
GTTTCTTTCTCTCCAAAACACACCAATATTTAGGGGGCTTCTTTTTCTTCTCTCNGCTTTTCTTTTTCTTTNCACTTATTAACATTCCACCCNCCAAGTTACCACCACTTCTTCTNCTCCTCCTCCTCCTCACTTCCTCATGTTATGTCTTCCATGATTTTCACCACCATCCTTCCCTTCTCTCTCTCTCACTTCCTCTGGAACCAGATTGTCCTTTATAGATTCATCTGAATTCACTTCGTTCTGTGAAAAGCAAAAAACTTATACATATTCCCACCCAAACCAAGTTTTTTCTTTTTTCAGTAATACAACCACCCTTTGAGGTTTAAAGGTTTGTAGAGAGGTGTTTGTTGATATTGAAATTCTTAGCTAAGAAAGGTTGTAGAGGGTTAACTTTAGAGTGTAAAATAACTGGAAAATGGAAAAAAATTCAGTGCTGTGTAAGGAAGAGGATCAGATGGATTTGCCTCCTGGGTTTCGGTTTCACCCAACTGATGAAGAGCTTATTAGTCATTACCTTTACAAAAGGGTAACTGACACCAACTTCTCTGCTAGAGCCATTGGAGAAGTGGACTTGAACAGGTCTGAACCTTGGGATTTGCCATGGAAAGCCAAAATGGGAGAGAAAGAGTGGTACTTCTTCTGTGTGAGGGACAGAAAATACCCAACTGGTTTGAGGACCAACAGAGCCACTGAAGCTGGATACTGGAAGGCCACAGGGAAAGACAAGGAGATCTACAGAGGGAAATCCCTGGTTGGGATGAAGAAAACTCTTGTTTTCTACAAAGGGAGGGCACCCAAAGGAGAGAAAACCAACTGGGTCATGCATGAATACAGGCTTGAGGGTAAATTCTCTGTTCACAACCTCCCCAAAACTGCAAAGAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTTAGCTGGGAACAAGAAGACATATATCTCTGGGATAATGAGGTTGGACTCATTTGGGAATGAATTGGGTTCTTCTATTCTGCCACCCCTCACAGATTCCTCACCAACCGAACCACCGAGTGTGAATGAGTCTGCTTACGTGCCCTGCTTCTCCAATCCAATTGATCATGTTCAAAGAAACCAACCTCAGGCCCCACCAAATTTGCCATTACCACCTGGTTCTGTTTATAGCACCAACCAGGACCAAACCATTCTCAGAGCCTTATTTGATCACCATGGGTCATCAAACTTGTTGTGGAATAATGGTTTCAAACCAGAGAGGGAAATGATCAATGTCTCACTCTCACAGGAAACAGGTCTCACTACTAATGTGAACACTGGAAACTCTTCTGTTGTGTCAAACTTTGAGAATAATCAGCAGCACCCAGCTGCACCACTGGATCCAGCTACCTTGTGGAATTACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	511719	513503	+

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001828.1	PF02365.10	NAM	16	142	4.90E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.033
SRR1783600	control	0.996
SRR1783602	moderate drought stress	2.658
SRR1811619	moderate drought stress	2.762

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.556
DRR006520	Root Summer glycyrrhizin high producing strain	0.600
DRR006521	Root Winter glycyrrhizin high producing strain	2.910
DRR006522	Root Winter glycyrrhizin high producing strain	2.625
DRR006523	Root Summer glycyrrhizin low producing strain	11.475
DRR006524	Root Summer glycyrrhizin low producing strain	12.233
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.269
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.244

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.734
SRR2868004	Drought Stress (root)	12.956
SRR2967015	Control (root)	18.766

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.554
SRR9715740	Leaf	1.892
SRR9715741	Leaf	1.114
SRR9715739	Root	1.735
SRR9715742	Root	1.742
SRR9715743	Root	1.222

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.954
SRR8749028	MeJA induced 9h	46.396
SRR8749029	MeJA induced 9h	26.574
SRR8749030	Uninduced	23.405
SRR8749031	Uninduced	21.993
SRR8749032	Uninduced	26.916

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.631
SRR8400027	Control - Root	11.934