Gene detail information of Glyur000020s00001823 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G61440.1 | 3.00E-44 | atypical CYS HIS rich thioredoxin 5 |
| NR | NP_001240909.1 | 1.11E-104 | uncharacterized protein LOC100800129 [Glycine max] |
| Swissprot | tr|Q9XFI1|TRL12_ARATH | 7.00E-58 | Thioredoxin-like 1-2, chloroplastic (Precursor) |
| trEMBL | tr|C6T8M7|C6T8M7_SOYBN | 4.00E-105 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G20980.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00020 | 492899 | 494039 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000020s00001823.1 | PF00085.15 | Thioredoxin | 115 | 182 | 2.40E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.706 |
| SRR1783600 | control | 0.451 |
| SRR1783602 | moderate drought stress | 0.599 |
| SRR1811619 | moderate drought stress | 0.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.964 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.136 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 40.460 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 35.530 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.585 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.420 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.378 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.862 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.923 |
| SRR2868004 | Drought Stress (root) | 2.064 |
| SRR2967015 | Control (root) | 3.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.421 |
| SRR9715740 | Leaf | 0.434 |
| SRR9715741 | Leaf | 0.242 |
| SRR9715739 | Root | 0.288 |
| SRR9715742 | Root | 1.448 |
| SRR9715743 | Root | 0.636 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 58.076 |
| SRR8749028 | MeJA induced 9h | 90.817 |
| SRR8749029 | MeJA induced 9h | 77.797 |
| SRR8749030 | Uninduced | 34.029 |
| SRR8749031 | Uninduced | 83.929 |
| SRR8749032 | Uninduced | 54.837 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.183 |
| SRR8400027 | Control - Root | 5.024 |