Gene detail information of Glyur000020s00001822 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G29030.1 | 9.00E-53 | expansin A5 |
| NR | EMT21884.1 | 1.27E-91 | hypothetical protein F775_32026 [Aegilops tauschii] |
| Swissprot | tr|Q38864|EXPA5_ARATH | 2.00E-77 | Expansin-A5 (Precursor) |
| trEMBL | tr|J3M852|J3M852_ORYBR | 4.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB05G27760.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00020 | 479413 | 482804 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000020s00001822.1 | PF03330.13 | DPBB_1 | 61 | 83 | 0.00013 |
| Glyur000020s00001822.1 | PF01357.16 | Pollen_allerg_1 | 91 | 168 | 2.70E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.183 |
| SRR1783600 | control | 1.166 |
| SRR1783602 | moderate drought stress | 1.533 |
| SRR1811619 | moderate drought stress | 1.535 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.305 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.327 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.099 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.083 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.066 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.878 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.914 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.977 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.732 |
| SRR2868004 | Drought Stress (root) | 0.829 |
| SRR2967015 | Control (root) | 1.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.636 |
| SRR9715740 | Leaf | 32.994 |
| SRR9715741 | Leaf | 20.578 |
| SRR9715739 | Root | 0.118 |
| SRR9715742 | Root | 3.495 |
| SRR9715743 | Root | 2.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.067 |
| SRR8749028 | MeJA induced 9h | 0.313 |
| SRR8749029 | MeJA induced 9h | 0.057 |
| SRR8749030 | Uninduced | 0.358 |
| SRR8749031 | Uninduced | 0.052 |
| SRR8749032 | Uninduced | 0.158 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.454 |
| SRR8400027 | Control - Root | 0.528 |