Gene detail

Gene detail information of Glyur000020s00001816

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74460.1	9.00E-151	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	KEH33318.1	0	GDSL-like lipase/acylhydrolase [Medicago truncatula]
COG	NP_923900.1	2.00E-16	esterase [Gloeobacter violaceus PCC 7421]
Swissprot	tr\|Q9CA68\|GDL31_ARATH	0	GDSL esterase/lipase At1g74460 (Precursor)
trEMBL	tr\|A0A072UW91\|A0A072UW91_MEDTR	0	GDSL-like lipase/acylhydrolase {ECO:0000313\|EMBL:KEH33318.1}

Sequence

Transcript Sequence

>Glyur000020s00001816.1
ATGAAGTTTGATCTGGCACTAGTGATTATAGCAGTCACCCTTTTAGGAATTGGGGTTGAAGGGTGCCATTGCAAGATTGTGCAGTTCATTTTTGGGGACTCCCTCTCTGACGTTGGAAATAACAAGTACCTCTCTAAAAGCCTTGCTCAGGCAAGTTTGCCTTGGTATGGTATTGATATAGGAAATGGACTCCCTAATGGAAGGTTCTCTAATGGTCGCACTGTCGCTGATATAATAGCATTCCTGGACCCATCTTTAAGTGAAGATGATATATTGGAAAATGGAGTGAATTATGCTTCTGGGGGTGGCGGCATATTGAATGAAACTGGGAGTTACTTTATTCAAAGGTTTTCTCTCTACAAACAAATTGAGCTGTTTCAAGGGACACAAGAACTGATTAGAAGCAAAATTGGGAAAGAGGAGGCAGACAAGTTTTTCAAGGGAGCTCGTTATGTTGTTGCTTTAGGCAGCAATGACTTCATCAACAACTACTTGATGCCTGTTTACAGTGATTCATGGACATACAATGATGAAACCTTCATGGACTACTTGATAGGAACACTAGGAGAACAACTCAAGCTACTGCATAGCCTAGGAGCAAGGCAATTGATGGTGTTTGGGTTGGGTCCAATGGGCTGCATTCCCCTTCAAAGAGTGCTTAGTACTTCTGGAGATTGTCAAGATAGAACAAACAAGCTGGCTCTTAGCTTTAATAAAGCTGCAAGCAAGTTAGTGGATGACTTGGGGAAGCAACTTCCCAATTCAAGTTACAGATTTGGAGATGCATATGACGTTGTTTATGATGTGATTAGCAACCCAAGCAAGCAAGGATTCCAAAACTCAGACTCACCCTGTTGTTCCTTTGGGAGGATACGACCTGCTCTTACATGTATACCAGCATCGACACTGTGCAAAGATAGAAGCAAGTACGTGTTTTGGGATGAGTACCATCCCTCAGACAAGGCTAATGAGCTAATTGCCAATGAGCTCATCAAGAAATTCGGATTCATGCGTGTTGATCAAACAGCNCCTCCTTCACCATCACCCGCCGTTGCTCCATCTCCAGATGATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	448876	450910	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001816.1	PF00657.17	Lipase_GDSL	29	330	2.80E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.928
SRR1783600	control	45.034
SRR1783602	moderate drought stress	35.893
SRR1811619	moderate drought stress	35.724

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.102
DRR006524	Root Summer glycyrrhizin low producing strain	0.102
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.254
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.258

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	106.708
SRR2868004	Drought Stress (root)	43.460
SRR2967015	Control (root)	38.618

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.031
SRR9715740	Leaf	0.118
SRR9715741	Leaf	0.620
SRR9715739	Root	43.578
SRR9715742	Root	13.408
SRR9715743	Root	20.624

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.030
SRR8749029	MeJA induced 9h	0.073
SRR8749030	Uninduced	0.725
SRR8749031	Uninduced	1.219
SRR8749032	Uninduced	0.150

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	133.805
SRR8400027	Control - Root	140.488