Gene detail information of Glyur000020s00001815.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18790.1 | 2.00E-45 | RWP-RK domain-containing protein |
| NR | XP_006578571.1 | 1.08E-125 | PREDICTED: protein RKD1-like [Glycine max] |
| Swissprot | tr|Q9M9U9|RKD1_ARATH | 9.00E-54 | Protein RKD1 |
| trEMBL | tr|K7KVZ1|K7KVZ1_SOYBN | 1.00E-113 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G20881.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00020 | 445052 | 446341 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | RWP-RK |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000020s00001815.1 | PF02042.10 | RWP-RK | 154 | 202 | 8.70E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.214 |
| SRR1783600 | control | 0.255 |
| SRR1783602 | moderate drought stress | 0.145 |
| SRR1811619 | moderate drought stress | 0.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.124 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.123 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.093 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.038 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.011 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.074 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.090 |
| SRR8400027 | Control - Root | 0.084 |