Gene detail

Gene detail information of Glyur000020s00001814

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62440.1	5.00E-44	Protein of unknown function (DUF3223)
NR	XP_007138179.1	8.15E-103	hypothetical protein PHAVU_009G187000g [Phaseolus vulgaris]
Swissprot	tr\|Q42463\|DCL_SOLLC	7.00E-07	Protein DCL, chloroplastic (Precursor)
trEMBL	tr\|V7AZY8\|V7AZY8_PHAVU	3.00E-103	Uncharacterized protein {ECO:0000313\|EMBL:ESW10173.1}

Sequence

Transcript Sequence

>Glyur000020s00001814.1
TTACTTTTTAAGTCCAAGCCTTTGGAGAAAAACCCACTCTGCTCAGNGCTCAGTGTGCCGTTTAGTCAGGAGCAAAGCACTACTTACTACCCACGAATCCACGATCACAATCTAGGGTTTTAGAGTTTCCCCGAAAACTGTAGTCTCGCACCAATGGCAGAAGGGACCGCACCGGAAGTCGTTGATCCCAGCAATGCCGTCGCCGCCTCCATGGACATGGACGTCGAAAACGTCGAGTCCGCCGACAACGGCGGCGATGCCAACCAAAAGCGGGCTTTGGAGGANGAGGAACCCCAGGACGACGTCGTTTTGAAGAAGCAGAAGGTGGACGAGGAGAAGTCAGTGGAAGAACAAAGGTTGGAGAAGTTGGAAGAACATGAAAAAGGAGAAGAAGAAAAGGGAGAAGGAGAAATAGAAGAAGAAGAAGAAAAGGAAGCATCTGGTCCCGTGAACTTGGGACCCAAGAGCTTTGGTTCTTCTCTGGAAATGTTCCATTACTTCTACAACTTTCTTCATGCCTGGCCTCAATATCTCAATATTAACAAGTATGAACACATGATGTTGTTGGAATTGCTTAAGAAAGGGCATGCAGAGCCTGATAAAAAGATNGGTGGAGGGGTTCGTTCTTTCCAAATTCGCAAGCATCCTACCTTTAAAAGTAGGTGCTTTTTCCTCATCAGGGAGGATGATTCTGTTGATGATTTCAGCTTCCGGAAGTGTGTGGACCATATTCTTCCCCTGCCAGAAGAGATGCATTTAAAATCTGAGGGGAACAAGGCATTTGGTGGTGGTGGTGGAGGAAAGCATTATGGAGGAAGAGGTGGCAAAGGGAGGGGCGGAAGAGGAGGAGGGCGTGGTCATGGAAGAGGAGGAAAGTGGAGGCATTGAATACAATAGTTTCTGCTGGTCTGGGTTTTATTTTGAGATCTATAANTTGTTCTGTTTACTTGGCTGGTGTATTTCACGTTTCCTGCTAATAACCTTATAATTCTGATTTTGGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	441232	442987	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009308 amine metabolic process

molecular_function

GO:0005507 copper ion binding

GO:0048038 quinone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001814.1	PF11523.3	DUF3223	118	190	3.00E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	38.837
SRR1783600	control	38.825
SRR1783602	moderate drought stress	38.356
SRR1811619	moderate drought stress	38.223

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	62.046
DRR006520	Root Summer glycyrrhizin high producing strain	62.253
DRR006521	Root Winter glycyrrhizin high producing strain	17.636
DRR006522	Root Winter glycyrrhizin high producing strain	17.077
DRR006523	Root Summer glycyrrhizin low producing strain	50.704
DRR006524	Root Summer glycyrrhizin low producing strain	51.099
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.366
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.405

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	64.782
SRR2868004	Drought Stress (root)	35.849
SRR2967015	Control (root)	38.950

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.741
SRR9715740	Leaf	12.626
SRR9715741	Leaf	8.203
SRR9715739	Root	32.408
SRR9715742	Root	39.280
SRR9715743	Root	39.722

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	98.255
SRR8749028	MeJA induced 9h	44.871
SRR8749029	MeJA induced 9h	57.236
SRR8749030	Uninduced	1.659
SRR8749031	Uninduced	0.420
SRR8749032	Uninduced	2.696

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	53.341
SRR8400027	Control - Root	55.778