Gene detail

Gene detail information of Glyur000020s00001812.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74680.1	7.00E-160	Exostosin family protein
NR	KEH33466.1	0	secondary cell wall glycosyltransferase family 47 protein [Medicago truncatula]
Swissprot	tr\|Q6DBG8\|ARAD1_ARATH	1.00E-77	Probable arabinosyltransferase ARAD1
trEMBL	tr\|A0A072UVN7\|A0A072UVN7_MEDTR	0	Secondary cell wall glycosyltransferase family 47 protein {ECO:0000313\|EMBL:KEH33466.1}

Sequence

Transcript Sequence

>Glyur000020s00001812.1
ATTCGTTTAAACAGAACATAAACCTTTGTCAATAAAGGTTCTTCCTTTTCTAGTCTGCAGTCCGAATGCGAAGCCACAGCACTGTGATGGAGTGAGTGCTGCATCAATCTCATCCATCAGGTACCTTGTTTTGCTCAGCTCAACACCACTTCATTCCCTCAATTCTCGACTACCCAGATGCCAATTCCTCTTTAACTCTCTTTCTCCCACACATTCTATTATCCTTCTGTTCACTCCTAACATTTTCTTCGGTTTCTTATGATCCCATCTCCTAAGCTTGTTATCTGAAACGCTTACTTGCTGAATGCTGAAGCTGAGACTTTTATTTTGTTCCCCCTTTTGTTGGTGTTTGTTTATTACTAGCTTTGATTAGGCTTCAACACAGGTTGAATTCCAAAGGCTTTCTCTGTTGATAAGAAGTTAGGGGGTTTTCCAATTGCTTTTTATATATCAAGTCAATTTACATGAGAACTGTTGGAGATCTTCTCCAACTATAGAAGGTTGAGAAGCCATTAGTAGGTGGGTGTGATCCTTTGACTTTGAGGGACTTTAGCTGTGGATGCATATTGTGGAGGGCTTATTGTTCAAACTATAACCCCAGTCAAGGTCATTGCTTCGTGTGTTTGGGGAAATAGCATTATACCCTTTGAGCAGCTCTATCTATTTCGTGTTGCTGTCTTGTTTGTTTGTTGTAGTCCCTGAAAGGTTTGCTTTTGTTGGAACTTGATCTTCAACAATGTCTGAGAAGAGCATGGTTCCCTCAAGGTTTATATTTTGCGTGATTCTCATTTCCATGTTCCTTTTGGTTTTGTCTTCCCTTTTCCTACTCCAGTTTAGTAGTCATTCTTTGATACCTAGATCAGTGTTAGATCTTATTATTGTCAATAATAAATCATTTTACTTCAAGCCCAATTTGAAGAGGGAACATATTATACACCCTGACTACCCTTCTGAGGATTTAAAATTCCAATCCCTAAAACCCAGAAAATCTGATTGGCAAGTTTCCAATTCAAGCCAGAAAAAAAGTTCTGTAGGACAGCAGATGAATATGGCGTGTGACCCAACTCGGGCTCTATTGAAAGTATTCATGTATGACTTGCCTCCAGAGTTTCACTTTGGGTTATTGGGTTGGAAGGGAAGTGTAAATCAAACATGGCCAGAGGTGGATAACCCCAAACATATCCCACGTTATCCGGGTGGACTGAACTTGCAGCACAGTGTGGAATACTGGCTCACCCTTGATCTTCTGTCATCAAACACTGCAAAAGCCAGCCGACCTTGCACCGCAATTAGAGTGCAGAATTCAAGTCAAGCAGATATAATTTTTGTGCCATTTTTCTCATCTCTGAGTTACAATCGGCATTCCAAGATCCGTGGAGAGGAAAAAGTTAGTGTTAACAAAATGTTGCAAGACAGATTGGTACGTTTCTTAATGGGCCAGAAAGAATGGAAACGTTCAGGAGGGAAGAATCATCTAATAGTAGCGCACCATCCTAACAGCTTGTTGGATGCAAGAAGAATGTTGGCTTCTGCTATGCTTGTGCTTGCGGATTTTGGAAGGTATCCTGTTGAATTAGCTAATATCAAGAAAGATATAATTGCCCCCTATAGGCATTTAGTGGGCACCATACCAAGAGCTGAATCAGCTTCATATGAGGAACGTTCCACACTGGTGTATTTCCAGGGGGCGATATACAGGAAAGATGGAGGAGCTATTCGCCAAGAACTGTATTACCTCCTCAAAGATGAGAGAGACGTGCATTTTGCATTTGGGAGCATAGGAGGAAATGGGATTAATCAGGCAAGCAAGGGCATGGCCTTGTCCAAATTCTGCCTGAACATTGCCGGGGATACCCCATCGTCCAATCGCCTCTTCGATGCCATAGTAAGCCACTGTGTTCCTGTGATCATCAGCGATGAAATTGAGCTACCATTTGAAGATGTCTTGGACTACTCGAAGTTCTCCTTATTCGTGCACGCCGCTGACGCTGTAAAGGAAGGCTACCTGCTGAATCTCCTTCATTCAATCAAACGGGAGGAGTGGACCAAGATGTGGGAAAGGTTGAAGGAGATTACACATCACTTTGAGTATCAATATCCNTCCCAGCCCGGGGATGCAGTGAACATGATTTGGCAGGAAGTTGCGCGTAAGATATCTTCAAAGCAGTTCAATTCACACAGGAAGAACAGATACCAGAGATCTCAGCTTCTTGTTAAGACAAACTGAAATGCTTAGATTCTGTTACATGGAATCATTTGACCTTGGTCACATTCAATATATCAATGAGTTTCATTTATTCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	430748	433755	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT47

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001812.1	PF03016.10	Exostosin	113	430	2.30E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.075
SRR1783600	control	11.179
SRR1783602	moderate drought stress	10.015
SRR1811619	moderate drought stress	9.993

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.074
DRR006520	Root Summer glycyrrhizin high producing strain	11.088
DRR006521	Root Winter glycyrrhizin high producing strain	5.574
DRR006522	Root Winter glycyrrhizin high producing strain	5.599
DRR006523	Root Summer glycyrrhizin low producing strain	10.518
DRR006524	Root Summer glycyrrhizin low producing strain	10.448
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.319
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.349

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.834
SRR2868004	Drought Stress (root)	10.903
SRR2967015	Control (root)	13.339

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.814
SRR9715740	Leaf	3.468
SRR9715741	Leaf	3.042
SRR9715739	Root	3.936
SRR9715742	Root	7.151
SRR9715743	Root	6.531

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.972
SRR8749028	MeJA induced 9h	8.167
SRR8749029	MeJA induced 9h	2.819
SRR8749030	Uninduced	2.022
SRR8749031	Uninduced	1.005
SRR8749032	Uninduced	0.566

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.877
SRR8400027	Control - Root	11.131