Gene detail information of Glyur000020s00001810.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18835.1 | 8.00E-32 | mini zinc finger |
| NR | XP_007138185.1 | 2.83E-48 | hypothetical protein PHAVU_009G187500g [Phaseolus vulgaris] |
| Swissprot | tr|Q2Q493|MIF3_ARATH | 1.00E-40 | Mini zinc finger protein 3 |
| trEMBL | tr|V7AX91|V7AX91_PHAVU | 1.00E-48 | Uncharacterized protein {ECO:0000313|EMBL:ESW10179.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00020 | 417575 | 417838 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | zf-HD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000020s00001810.1 | PF04770.7 | ZF-HD_dimer | 21 | 74 | 3.30E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.733 |
| SRR1783600 | control | 0.408 |
| SRR1783602 | moderate drought stress | 1.510 |
| SRR1811619 | moderate drought stress | 1.409 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.878 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.395 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.202 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.412 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.311 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.444 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.352 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.294 |
| SRR2868004 | Drought Stress (root) | 25.920 |
| SRR2967015 | Control (root) | 17.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.497 |
| SRR9715740 | Leaf | 0.711 |
| SRR9715741 | Leaf | 0.416 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 9.709 |
| SRR9715743 | Root | 8.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.324 |
| SRR8400027 | Control - Root | 6.952 |