Gene detail information of Glyur000020s00001804 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18800.1 | 2.00E-97 | NAP1-related protein 2 |
| NR | ACJ84827.1 | 4.90E-147 | unknown [Medicago truncatula] |
| Swissprot | tr|Q8LC68|NRP2_ARATH | 6.00E-122 | NAP1-related protein 2 |
| trEMBL | tr|B7FJ98|B7FJ98_MEDTR | 2.00E-147 | Putative uncharacterized protein {ECO:0000313|EMBL:ACJ84827.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00020 | 369040 | 376462 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000020s00001804.1 | PF00956.13 | NAP | 29 | 83 | 3.00E-11 |
| Glyur000020s00001804.1 | PF00956.13 | NAP | 148 | 341 | 1.30E-51 |
| Glyur000020s00001804.2 | PF00956.13 | NAP | 29 | 85 | 7.00E-12 |
| Glyur000020s00001804.2 | PF00956.13 | NAP | 82 | 263 | 4.00E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 129.325 |
| SRR1783600 | control | 129.951 |
| SRR1783602 | moderate drought stress | 118.019 |
| SRR1811619 | moderate drought stress | 117.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 210.124 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 208.064 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 90.428 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 88.385 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 162.700 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 162.129 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 67.440 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 67.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 149.306 |
| SRR2868004 | Drought Stress (root) | 93.283 |
| SRR2967015 | Control (root) | 87.492 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 57.938 |
| SRR9715740 | Leaf | 83.777 |
| SRR9715741 | Leaf | 61.801 |
| SRR9715739 | Root | 54.068 |
| SRR9715742 | Root | 83.391 |
| SRR9715743 | Root | 82.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 322.699 |
| SRR8749028 | MeJA induced 9h | 146.725 |
| SRR8749029 | MeJA induced 9h | 199.015 |
| SRR8749030 | Uninduced | 46.872 |
| SRR8749031 | Uninduced | 20.833 |
| SRR8749032 | Uninduced | 28.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 142.379 |
| SRR8400027 | Control - Root | 120.229 |