Gene detail

Gene detail information of Glyur000020s00001803

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G19010.1	1.00E-32	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	KEH33487.1	1.60E-172	flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula]
COG	YP_004572412.1	1.00E-38	oxidoreductase [Microlunatus phosphovorus NM-1]
Swissprot	tr\|Q8H1S4\|ACCH3_ARATH	5.00E-36	1-aminocyclopropane-1-carboxylate oxidase homolog 3
trEMBL	tr\|A0A072UV45\|A0A072UV45_MEDTR	6.00E-173	Flavonol synthase/flavanone 3-hydroxylase {ECO:0000313\|EMBL:KEH33487.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	363670	366636	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001803.1	PF14226.1	DIOX_N	6	104	1.20E-22
Glyur000020s00001803.1	PF03171.15	2OG-FeII_Oxy	140	236	4.70E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.483
SRR1783600	control	35.885
SRR1783602	moderate drought stress	20.094
SRR1811619	moderate drought stress	19.731

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.107
DRR006520	Root Summer glycyrrhizin high producing strain	1.068
DRR006521	Root Winter glycyrrhizin high producing strain	0.335
DRR006522	Root Winter glycyrrhizin high producing strain	0.302
DRR006523	Root Summer glycyrrhizin low producing strain	0.894
DRR006524	Root Summer glycyrrhizin low producing strain	0.835
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.907
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.475

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	97.279
SRR2868004	Drought Stress (root)	64.161
SRR2967015	Control (root)	59.786

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.602
SRR9715740	Leaf	2.606
SRR9715741	Leaf	8.189
SRR9715739	Root	11.028
SRR9715742	Root	30.441
SRR9715743	Root	26.143

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.674
SRR8749028	MeJA induced 9h	3.899
SRR8749029	MeJA induced 9h	2.505
SRR8749030	Uninduced	7.057
SRR8749031	Uninduced	0.545
SRR8749032	Uninduced	1.122

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	63.066
SRR8400027	Control - Root	61.678