Gene detail

Gene detail information of Glyur000020s00001799

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G11710.1	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_006467434.1	PREDICTED: pentatricopeptide repeat-containing protein At1g11710, mitochondrial-like isoform X1 [Citrus sinensis]
Swissprot	tr\|Q9SAA6\|PPR34_ARATH	Pentatricopeptide repeat-containing protein At1g11710, mitochondrial (Precursor)
trEMBL	tr\|A0A067GHV2\|A0A067GHV2_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO78230.1}

Sequence

Transcript Sequence

>Glyur000020s00001799.1
ATGTTTTTAACCTTCATTTCATCCAAAACTTGTTTCATTCTCACCCGTGCTTTCCACGCCGGTAAGCTTTTCTCAAACCCCCCAACTTCTCAAGATATCGTTTTCAGAGCAATTTGTGTTNATCTAAAACNCAGGAGATGGAGTGCCTTGGAGCAACTATCCCCAAAGATCACCAATTTCATGGTGAACCGAGTTGTTTCCGAGTTCCAGAACTCGCCCCAGTTAGCTTTGGAGTTTTACAATTGGGTGGGGCAGTTATTCCCCCACTCCTTACCCTCTTCTTGCACCTTGCTTCACGTCTTGGTGAAGTCAAGGAGATTCGATGAGGCCTTGTTTCTCATGAGAAACTTGATTGCTGAAGAGGGCACTTCTCCTTTGGAGTTGTTAGAGGCACTGATTGAGAGTTATAATAGAAATTGTAGCTCGAGTGCCACGGTTTTCGATGCGTTGGTGAGGGCTTGTACTCAAGTTGGGGACACTGAAGGTGCTTATGGTGTGATCTGTGAACTAAGACACCGTGGGTTCTCGGTTACGGTTCATGCCTGGAATAACTTCCTGAGTCACCTATTGGAGTTGGGTGATGTTGATAGGTTCTGGAAGTTATATAAAGGAATGAGTTCTTTTGGGTACATGGAAAATGTGAATACTTTTAATTTGGTTATCTATGCCTTTTGTAAGGAATGCAGAGTGGTGGAAGCTATTTCTGTGTTCTATAGGATGTTGAAGGATGAAGTTTTCCCCAANGTTGTTTCTTTCAACATGCTAATAGATGGGGCGTGCAAGATTGGCAACTTGGGACTCGCCTTGAAGCTTATGAAGAAGATGCATGTGATGACTGGGAATTCTGTCTGGCCCAATTCTGTTACTTACAACTGTATCATTAATGGGTTCTGCAAGAAAGGGAGATTAGTGCTTGCTGAAGAAATGCTTCGTGAAATGGTCAAGGCGGGTTTTGAGCCGAGTGTTAGGACGTATGCTACTTTAATTGATGGGTATGCCAGGTGGGGGAGTTTGGAGGAGGCACTCAGGCTGTGTGATGAAATGGTGGAAAGAGGATTGTTTCCTAATATTGCTGTTTACAACTCGATTTTATACTGGCTTTATCGTCAAGGAGGTATGGAGGAAGCATCTTTGGTTTTATCTGACATGATTGATAGCCATATATACCCTGATCAGTACTCCTATGCAATCCTCACCAAAGGGCTATGCAGAAATGGATATCTGACTGAAGCTCTTAAGCTTCATAACCAGATTTCAAAAATGAACTTAGTAAAGGATGTTTTTCCTCTCAACATACTCCTCAACTANATATGCAAAAGCAAAAACTTGGCAGTGGCTAAGCAAATATTGGGCAGCATGATTACACGNGGTCTAGTTCCTGATGTTTATACATATGGAACTGTGATTGATGGATACTGCAAGCTAGGTGACACAGAAAATGCACTTCAAGTTTATGATGGGATGATAAAGATGGATGAGAAGCCAAACTTAACAATATACAATTCTGTCATCAATGGTCTATGTAAAATGGCCTCAACAGATCTTGCAAAAAATTTAGTGGATGAATTAAGAAAGAGAAAACTATTGGATGTCACTACCTTTAACACCTTGATTAGTGGATATTGCATCAGCGGGCAGATTGATGAAGCNTTTGGTTTGACAATGGAAATGAAGAAGTTGGGCATTTCCGCAAACAGAGTCACATATAATACATTGATAAACCTTCTCTGCAAGTATGGGTGTGATGAAGAAGCGAAAGAACTAATGAAGACGATGATTATGCAGGGCATTCGTCCAGATTGTATAACATACACTACACTTATTACCCATTTCAACAAGAAATGTCATTCTGATGAAGTGATTGCATTGCATGATTACATGATTCTTAAGGGAGTAGTCCCTGACCAGAAAACATACAATGCTATTGTAAGCCCGCTTCTTTTAGCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	342125	344074	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001799.1	PF01535.15	PPR	147	175	0.45
Glyur000020s00001799.1	PF13041.1	PPR_2	213	261	7.00E-11
Glyur000020s00001799.1	PF13041.1	PPR_2	285	334	2.60E-17
Glyur000020s00001799.1	PF13041.1	PPR_2	355	404	2.70E-10
Glyur000020s00001799.1	PF13812.1	PPR_3	430	460	0.28
Glyur000020s00001799.1	PF13041.1	PPR_2	464	509	4.80E-11
Glyur000020s00001799.1	PF13041.1	PPR_2	530	578	4.00E-17
Glyur000020s00001799.1	PF13041.1	PPR_2	599	644	1.50E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.700
SRR1783600	control	0.725
SRR1783602	moderate drought stress	0.868
SRR1811619	moderate drought stress	0.852

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.379
DRR006520	Root Summer glycyrrhizin high producing strain	1.183
DRR006521	Root Winter glycyrrhizin high producing strain	1.198
DRR006522	Root Winter glycyrrhizin high producing strain	1.144
DRR006523	Root Summer glycyrrhizin low producing strain	1.038
DRR006524	Root Summer glycyrrhizin low producing strain	0.980
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.918
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.856

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.355
SRR2868004	Drought Stress (root)	2.657
SRR2967015	Control (root)	3.490

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.941
SRR9715740	Leaf	2.445
SRR9715741	Leaf	1.434
SRR9715739	Root	0.443
SRR9715742	Root	0.990
SRR9715743	Root	0.653

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.281
SRR8749028	MeJA induced 9h	0.778
SRR8749029	MeJA induced 9h	0.186
SRR8749030	Uninduced	0.248
SRR8749031	Uninduced	0.128
SRR8749032	Uninduced	0.058

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.986
SRR8400027	Control - Root	2.031