Gene detail information of Glyur000020s00001797 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | ATMG00210.1 | 1.00E-42 | ribosomal protein L5 |
| NR | CAA46239.1 | 8.16E-52 | unnamed protein product [Arabidopsis thaliana] |
| Swissprot | tr|P49388|RM05_BRANA | 3.00E-52 | 60S ribosomal protein L5, mitochondrial |
| trEMBL | tr|R4IUD4|R4IUD4_VICFA | 6.00E-52 | Ribosomal protein L5 {ECO:0000313|EMBL:AGC78847.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00020 | 340304 | 340705 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.799 |
| SRR1783600 | control | 1.883 |
| SRR1783602 | moderate drought stress | 1.235 |
| SRR1811619 | moderate drought stress | 1.657 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.052 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.913 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.211 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.953 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.909 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.141 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.479 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.478 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.256 |
| SRR2868004 | Drought Stress (root) | 0.162 |
| SRR2967015 | Control (root) | 0.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.200 |
| SRR9715740 | Leaf | 2.693 |
| SRR9715741 | Leaf | 2.240 |
| SRR9715739 | Root | 6.836 |
| SRR9715742 | Root | 1.962 |
| SRR9715743 | Root | 3.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.045 |
| SRR8749028 | MeJA induced 9h | 1.462 |
| SRR8749029 | MeJA induced 9h | 1.085 |
| SRR8749030 | Uninduced | 3.126 |
| SRR8749031 | Uninduced | 0.904 |
| SRR8749032 | Uninduced | 4.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.284 |
| SRR8400027 | Control - Root | 0.071 |