Gene detail information of Glyur000020s00001791


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G39850.15.00E-92Ribosomal protein S4
NRXP_003549666.12.49E-137PREDICTED: 40S ribosomal protein S9-2-like [Glycine max]
COGYP_003669638.12.00E-3630S ribosomal protein S4 [Staphylothermus hellenicus DSM 12710]
Swissprottr|Q9FLF0|RS92_ARATH2.00E-12040S ribosomal protein S9-2
trEMBLtr|I1JZQ6|I1JZQ6_SOYBN9.00E-138Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G01180.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00020328956330831-


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005622  intracellular

GO:0015935  small ribosomal subunit


molecular_function

GO:0003723  RNA binding

GO:0003735  structural constituent of ribosome

GO:0019843  rRNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000020s00001791.1PF00163.14Ribosomal_S4211192.20E-25
Glyur000020s00001791.1PF01479.20S41201645.70E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control263.710
SRR1783600control265.589
SRR1783602moderate drought stress334.734
SRR1811619moderate drought stress333.854

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain480.251
DRR006520Root Summer glycyrrhizin high producing strain474.155
DRR006521Root Winter glycyrrhizin high producing strain163.204
DRR006522Root Winter glycyrrhizin high producing strain159.766
DRR006523Root Summer glycyrrhizin low producing strain336.459
DRR006524Root Summer glycyrrhizin low producing strain339.478
DRR006525Leaf Summer glycyrrhizin high producing strain100.099
DRR006526Leaf Summer glycyrrhizin high producing strain97.548

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)492.609
SRR2868004Drought Stress (root)347.432
SRR2967015Control (root)377.250

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf233.414
SRR9715740Leaf226.018
SRR9715741Leaf195.800
SRR9715739Root966.152
SRR9715742Root466.147
SRR9715743Root549.191

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h519.281
SRR8749028MeJA induced 9h255.836
SRR8749029MeJA induced 9h340.328
SRR8749030Uninduced63.688
SRR8749031Uninduced30.180
SRR8749032Uninduced100.580

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root498.169
SRR8400027Control - Root499.960

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved