Gene detail information of Glyur000020s00001790 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53840.1 | 7.00E-33 | pectin methylesterase 1 |
| NR | XP_007138198.1 | 2.91E-90 | hypothetical protein PHAVU_009G188700g [Phaseolus vulgaris] |
| Swissprot | tr|Q43111|PME3_PHAVU | 3.00E-41 | Pectinesterase 3 (Precursor) |
| trEMBL | tr|V7AX27|V7AX27_PHAVU | 1.00E-90 | Uncharacterized protein {ECO:0000313|EMBL:ESW10192.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00020 | 326915 | 327643 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000020s00001790.1 | PF04043.10 | PMEI | 78 | 226 | 2.20E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 103.285 |
| SRR1783600 | control | 105.985 |
| SRR1783602 | moderate drought stress | 80.075 |
| SRR1811619 | moderate drought stress | 74.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 73.859 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 71.902 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 256.794 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 241.044 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 151.030 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 141.180 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 45.718 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 47.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 70.939 |
| SRR2868004 | Drought Stress (root) | 104.395 |
| SRR2967015 | Control (root) | 123.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 80.641 |
| SRR9715740 | Leaf | 83.274 |
| SRR9715741 | Leaf | 56.238 |
| SRR9715739 | Root | 193.122 |
| SRR9715742 | Root | 66.960 |
| SRR9715743 | Root | 83.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 149.506 |
| SRR8749028 | MeJA induced 9h | 470.091 |
| SRR8749029 | MeJA induced 9h | 238.672 |
| SRR8749030 | Uninduced | 168.176 |
| SRR8749031 | Uninduced | 118.906 |
| SRR8749032 | Uninduced | 344.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 88.348 |
| SRR8400027 | Control - Root | 114.909 |