Gene detail

Gene detail information of Glyur000020s00001787

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74510.2	6.00E-147	Galactose oxidase/kelch repeat superfamily protein
NR	XP_007138202.1	0	hypothetical protein PHAVU_009G189100g [Phaseolus vulgaris]
COG	YP_003393273.1	6.00E-10	Kelch repeat-containing protein [Conexibacter woesei DSM 14684]
Swissprot	tr\|Q9CA63\|FBK29_ARATH	0	F-box/kelch-repeat protein At1g74510
trEMBL	tr\|V7B178\|V7B178_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW10196.1}

Sequence

Transcript Sequence

>Glyur000020s00001787.1
ATGTTGGAGGGTCCCTCGTTTCTCGTTTCAAGGGACTTACCAAGCTCATGTGAGCAAGAGACCAAGTGGATATACAATACTTTCTGTGTCATGGAGCTTGCAAACAATAAGCGTCGACTGGAACAAGAGGAAGAAATTGTCTTGAGAAAGTCATGCAAGCTTTCAGATGTTCCTGAGGAAGGGGAAAAGGAGAACAATATCCATGATCTTTCCCTTTCCTTTAACCAAGCAAATGACCAAAACCATGCTGGTGATCAGTCGGACTCCAGTTCGCTTATCCACCAACTAGGTCGGGACATGTCAATTAACTGTCTTCTAAGATGCTCAAGGTCTGACTATGGTTCNATTGCCTCATTGAACCAGAGTTTTCGATCTCTCATTCGAAGTGGAGAGCTTTATAGACTGAGGCGACTGATGGGTATCATAGAACATTGGGTTTACTTCTCTTGCAATCTCCCTGAATGGGAGGCATTCGATCCAAACAGTGGTCGATGGATGCGCTTGCCTAGAATGCCTTCTAATGAATGCTTTATCTGTTCGGATAAGGAGTCGTTGGCTGTTGGTACTGAGCTTCTTGTTTTTGGAAAGGAAATATTTTCTCCTGTCATTTACAGATATAGCATTTTGATGAATGCCTGGTCATCCGGTATGCAAATGAACATTCCTAGATGCTTGTTCGGTTCTGCCAGCCGTGGAGAAATCGCCATATTAGCCGGTGGTTGCGATCCACGTGGAAATATCTTGAGCTCAGCTGAGCTTTATAATTCAGAAACTGGAGCCTGGGAGGTTCTTCCAAACATGAATAAAGCAAGGAAAATGTGTTCCGGTGTGTTCATAGATGGGAAATTTTATGTCATTGGTGGGATTGGAATAGGTAGCTCAAAGCAGCTAACATGTGGTGAGGAGTTTGATCTGCAGACAAGAAAATGGCGTGTAATACCAAACATGTTCCCCGGGAGAAATGGAGGATCTGGGGTGACTGAGGTACCAGCTGCTGCTGAGGCTCCTCCTTTGGTTGCGGTTGTAAATAATGTATTGTATGCTGCAGATTATGCACAGCAAGCAGTAAGGAGATATTATAAAGACAGTAACTCATGGGTCACTATTGGAAGATTACCCGAGCGAATAGTCTCGATGAATGGCTGGGGATTAGCCTTTCGAGCATGTGGAAATCGCCTGATTGTTATTGGTGGGCCGAGAGCTTTGGATGGAGGGGTGATCGAGGTTAATGCTTGTGTCCCGGGTGAAGGTGCACCAGAGTGGAACCTGCTTGCCAGCAGGCAATCAGGGAGCTTTGTGTATAATTGCGCAGTGATGGGATGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	318800	320125	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001787.1	PF01344.20	Kelch_1	222	268	2.40E-07
Glyur000020s00001787.1	PF01344.20	Kelch_1	270	316	2.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.406
SRR1783600	control	3.994
SRR1783602	moderate drought stress	3.763
SRR1811619	moderate drought stress	3.730

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.931
DRR006520	Root Summer glycyrrhizin high producing strain	5.647
DRR006521	Root Winter glycyrrhizin high producing strain	1.882
DRR006522	Root Winter glycyrrhizin high producing strain	1.714
DRR006523	Root Summer glycyrrhizin low producing strain	22.179
DRR006524	Root Summer glycyrrhizin low producing strain	22.126
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.682
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.553

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.133
SRR2868004	Drought Stress (root)	32.827
SRR2967015	Control (root)	28.262

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.321
SRR9715740	Leaf	14.683
SRR9715741	Leaf	29.117
SRR9715739	Root	5.586
SRR9715742	Root	17.036
SRR9715743	Root	16.634

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.599
SRR8749028	MeJA induced 9h	22.457
SRR8749029	MeJA induced 9h	15.973
SRR8749030	Uninduced	89.966
SRR8749031	Uninduced	35.768
SRR8749032	Uninduced	34.829

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.658
SRR8400027	Control - Root	21.994