Gene detail

Gene detail information of Glyur000020s00001785.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G02800.2	6.00E-146	protein kinase 2B
NR	XP_003609045.1	0	Protein kinase 2B [Medicago truncatula]
COG	YP_008151634.1	7.00E-25	hypothetical protein SCE1572_26190 [Sorangium cellulosum So0157-2]
Swissprot	tr\|O49840\|APK2B_ARATH	3.00E-180	Protein kinase 2B, chloroplastic (Precursor)
trEMBL	tr\|G7JQX5\|G7JQX5_MEDTR	0	Tyrosine kinase family protein {ECO:0000313\|EMBL:AES91242.2}

Sequence

Transcript Sequence

>Glyur000020s00001785.1
AAACTAACCCCTTGCTGCTTACACACTTGCCAGTTGTTTGTTGCAACATAATAGATCATTCTCTAAAATCTAAATCTTCATTCTCTCTCTCATAAATTTCGTGCCTCCCTTATCTGTATTTCCAAAATGCTAATCGTTATCGTTTGCCCCTGTACAAAATAATAGTACAACAGAACACCATAACCTGGTTCTGTCTCTTGAAGCACGGGGAGATCAGGACACGATGCGGGAAAACTACAAGAGAAAACCAAACAAATTTGGATATTCACATCCACCAAGGTTTTGAAATTTGAACTCTTTTTTTTTTTTTTTTTAAATTTTGTTGGGTTTTGGAAGGAGACTCTCATGGGAAATTGCCTCGGAGCTCGTTCAAAGGTTGATATATCTGAGAATTCTCACGCCACTTTTGCAGATGGTACAAAAGTTCCTGGTAGAAGCATCCATTCCTTGGCTCATCCAAGTTCAAAAGTGCATGAATATCATGATGAGGGTAAACTTAAGACTCTCCCTACTCCAAAATCTGAAAGTAATGTACTTTCCTCCCCATATTTAAAAGCCTTCACATTCGATGATCTGAAGAACGCTACAAGAAACTTTAGTCCTGATAGTCTGATAGGAGAAGGGGGATTTGGTCATGTCTATAAGGGGTGGATTGATGAGCATTGCCTTGGGGCTGCAAGGCCGGGATATGGAATGATTGTAGCTGTGAAAAAGCTTAAACCTAAAGGTTTTCAAGGCCATAAGGAGTGGCTGTCTGAAGTCAATTATCTTGGCCAACTTCATCATCCAAATCTTGTCAAACTTTTTGGATGCTGCTTGGATGGGGACAACCGACTTCTAGTCTACGAGTACATGCCGAGAGGCAGCTTGGAGAATCATCTATTTTGCAGGGGTGTGCGAACACTTCCTTGGGCAGCAAGGATCAAAGTTGCCATTGGTGCTGCTCGAGGTCTCACCTTCTTACATGACTCTGAGCAACAAGTTATCTACCGAGATTTGAAGGCTTCTAATATTTTATTAGATTCGGAATTTAATGCAAAACTATCAGACTTTGGTCTGGCCAAAGCAGGGCCCACTGGTGATCGCACTCATGTTTCTACTCGAGTTCTGGGTACTGAAGGCTATGCCGCTCCTGAATATATTGCTACAGGCCATCTGACTGCAAAGTGTGATGTCTATAGCTTTGGGGTTGTTTTATTGGAACTACTATCAGGACGCCGTGCTGTTGATAAAACAAAACCTAAGGTTGAACAAAATCTTGTAGATTGGGCAAGACCCTATTTGGGTGATAGGAGGAAGCTGTTCCGGATTATGGACAACAGGTTAGAAGGACAGTACCCCCAGAGGGCAGCATATACAACTGCAATTCTTGCATTTCAATGTATTTGTGAGGTCANAAACAGACCTCAGATGTCTGAGGTTTTGGCTATATTGGAACAGTTGCCTTCTATGAGACATTCAATTTCAGCCAGCCCACATAGGAAGTCCGTGTCCAGCCCCAATGTAAAATCCCCTTTGACACATAATCATCATCATTCAGTAGATAGGTGCATTGCTGACATCTCTGTTAGATCCCCTATGGGATCTCCATTTGTGCAATCCCCTAGAGATTCATTTGCTCTTCAAGTGTAGATTTCCTTGTTTTTCTTCCTTGGTCCTATGTGGGGAGTTGTAGCTACAGAAATTTGGTCATAGAGATGTCATCAGCATCAAAATGCATTGTTATATCTATTCTTTTAATCTTGTTTAGTATCTACTACTGTAGGCCTTTTTGTAACATTATTGTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00020	296146	299648	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.2.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000020s00001785.1	PF07714.12	Pkinase_Tyr	88	297	3.80E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.689
SRR1783600	control	1.758
SRR1783602	moderate drought stress	1.842
SRR1811619	moderate drought stress	1.806

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.728
DRR006520	Root Summer glycyrrhizin high producing strain	1.657
DRR006521	Root Winter glycyrrhizin high producing strain	1.778
DRR006522	Root Winter glycyrrhizin high producing strain	1.851
DRR006523	Root Summer glycyrrhizin low producing strain	1.931
DRR006524	Root Summer glycyrrhizin low producing strain	1.773
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.981
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.966

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.490
SRR2868004	Drought Stress (root)	1.587
SRR2967015	Control (root)	1.728

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.411
SRR9715740	Leaf	0.177
SRR9715741	Leaf	0.146
SRR9715739	Root	0.554
SRR9715742	Root	0.329
SRR9715743	Root	0.326

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.467
SRR8749028	MeJA induced 9h	0.889
SRR8749029	MeJA induced 9h	0.204
SRR8749030	Uninduced	0.638
SRR8749031	Uninduced	0.371
SRR8749032	Uninduced	0.778

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.929
SRR8400027	Control - Root	0.849